agriGO - single species analysis

Setaria italica Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

SEA is a traditional and widely used method. User only needs to prepare a list of gene/probe names, and enrichment GO terms will be found out after statistical test from pre_calculated background or customized one.

2. Input a gene list:


<allowed ID types in Setaria_italica>
locus ID v2.2 (Phytozome v11.0)  (eg.Seita.9G087300)
locus ID v2.1(SIFGD)  (eg.Si035812m.g)
transcript ID v2.1(SIFGD)  (eg.Si016677m)
locus ID  (Gramene Release 50)  (eg.Si005941m.g)
locus ID (PLAZA3.0)  (eg.SI002G39990)
Entry identifier (Uniprot 2016)  (eg.K3ZQX9)
protein ID (compute)  (eg.SiPROV014632m)

3. Select reference:

Suggested backgrounds

Customized reference [ Example ]

For each species, suggested backgrounds are provided. These backgrounds are all pre_computated, and are available to download. To those species without a relatively completed GO profile, backgrounds from near organisms are used as suggestion. If you don't like these backgrounds, then you may submit your customized with/without GO annotation.

Setaria italica Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

2. Input a gene list:

3. Select reference:

4. Advanced options (optional):