agriGO - single species analysis

Hordeum vulgare Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

SEA is a traditional and widely used method. User only needs to prepare a list of gene/probe names, and enrichment GO terms will be found out after statistical test from pre_calculated background or customized one.

2. Input a gene list:


<allowed ID types in Hordeum_vulgare>
locus ID  (Gramene Release 50)  (eg.MLOC_57498)
locus ID (PLAZA3.0)  (eg.HV1583188G00010)
Entry identifier (Uniprot 2016)  (eg.M0VQJ2)
Entry identifier (Uniprot)  (eg.F2DMV0)
Affymetrix barley Genome Array (compute)  (eg.Contig13240_s_at)
GenBank ID (compute)  (eg.AAZ23774.1)
DDBJ ID (compute)  (eg.BAF93986.1)
EMBL ID (compute)  (eg.CAW99846.1)
Swiss-Prot ID (compute)  (eg.SODM)
Trembl ID (compute)  (eg.B0BKB0)
PDB ID (compute)  (eg.2jki_A)
locus ID (DFIC)  (eg.TC279512)
gene ID (IPK Barley BLAST Server)  (eg.HORVU3Hr1G094420)
gene ID (Genome Version2.0,user defined)  (eg.HORVU.MOREX.r2.4HG0346470)

3. Select reference:

Suggested backgrounds

Customized reference [ Example ]

For each species, suggested backgrounds are provided. These backgrounds are all pre_computated, and are available to download. To those species without a relatively completed GO profile, backgrounds from near organisms are used as suggestion. If you don't like these backgrounds, then you may submit your customized with/without GO annotation.

Hordeum vulgare Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

2. Input a gene list:

3. Select reference:

4. Advanced options (optional):