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Analysis Gene Sets

Users can submit a list of gene sets for overlap computing.

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G1:Gene ontology gene sets
BP: GO biological process
CC: GO cellular component
MF: GO molecular function
G2:Other ontology gene sets
PO: Plant Ontology gene sets
TO: Plant Trait Ontology gene sets
PECO: Plant Experimental Conditions Ontology gene sets
G3:Pathway gene sets
PlantCyc: PlantCyc gene sets
KEGG: KEGG gene sets
Mapman: Mapman gene sets
G4:Gene family based gene sets
TR: Transcription Regulators/Factors
CAZy: Carbohydrate-Active Enzymes
PK: Protein Kinase
Ub: Ubiquitins
P450: Cytochrome P450
EAR: EAR motif
LIP: Lipid metabolism Enzymes
Caf: Chromatin associated factor
OTH: Other gene family based gene sets
G7:CoM based gene sets
CoM: Co-expression gene module
G5:Chromatin states based gene sets
Sta: Chromatin states
ERG: Epigenetic mark related genes
CRG: Chromatin associated factor related genes
HiC: Hi-C identified genes
G8:Reference gene sets
LIT: Literature/Reference gene sets
G6:Target gene sets
TFT: Transcription Factor Targets
MIR: MicroRNA Targets
G9:New type gene sets
ScR: Single cell RNA-Seq identified gene sets
LLPS: Liquid-liquid phase separation related genes
Rbp: RNA binding protein

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Note: (1)Color not in white means background database is available, while white means under construction.

          (2)The numbers in G4 column are available gene families.

G1G2G3G4G5G6G7G8G9
GOPOTOPECOCycKEGGMapGFamStaERGCRGHiCTFTMIRCoMLITScRLLPSRbp
A.lyrata       3           
A.tauschii       3           
A.thaliana       9           
A.trichopoda       2           
B.distachyon       3           
B.napus       1           
B.rapa       2           
C.clementina       2           
C.melo                  
C.reinhardtii       2           
C.roseus       4           
C.sativus       3           
C.sinensis       2           
F.vesca       2           
G.arboreum       4           
G.hirsutum       4           
G.max       4           
G.raimondii       4           
H.vulgare       2           
L.usitatissimum       2           
M.acuminata       2           
M.domestica       4           
M.esculenta       2           
M.truncatula       2           
O.sativa       7           
P.edulis       1           
P.patens       2           
P.persica       2           
P.trichocarpa       2           
P.virgatum       2           
P.vulgaris       2           
R.communis       2           
S.bicolor       6           
S.italica       5           
S.lycopersicum       6           
S.moellendorffii       2           
S.polyrhiza       2           
S.tuberosum       2           
S.viridis       2           
T.aestivum       2           
T.cacao       2           
T.dicoccoides       3           
T.urartu       3           
V.carteri       2           
V.vinifera       2           
Z.mays       4           
 


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