The PlantGSEA: Database of Geneset Enrichment Analysis in Plant

Analysis Gene Sets

Users can submit a list of gene sets for overlap computing.

Choose Gene Sets

G1:GO gene sets
BP:GO biological process CC:GO cellular component MF:GO molecular function
G2:Gene Family Based gene sets
G3:Curated gene sets
PlantCyc:PlantCyc gene sets KEGG:KEGG gene sets PO:Plant Ontology gene sets Ref:References colleted gene sets
G4:Motif gene sets
MIR:MicroRNA Targets TFT:Transcription Factor Targets
G5:Clusters

Choose Species

Submit Your Query

Example of Query

Or you can upload file (max filesize 5MB)

	G1	G2	G3				G4		G5
	GO	GFam	Cyc	KEGG	PO	Ref	MIR	TFT	Clu
A.thaliana
B.distachyon
G.arboreum
G.hirsutum
G.raimondii
G.max
O.sativa
P.trichocarpa
R.communis
S.bicolor
S.italica
T.cacao
Z.mays
B.napus
S.polyrhiza
S.lycopersicum

Note: Color in green means background database is available, while grey means under construction.

Choose Background

Suggested background (Whole genome level)
Customized background

Parameter Select(optional):

Arabidopsis thaliana(Arabidopsis)
Oryza sativa(Rice)
Zea mays(Maize)
Gossypium raimondii(Cotton)
Gossypium arboreum(Asia Cotton)
Gossypium hirsutum(Upland Cotton)
Glycine max(Soybean)
Brachypodium distachyon(Brachypodium)
Setaria italica(Foxtail millet)
Sorghum bicolor(Sorghum)
Populus trichocarpa(Populus)
Ricinus communis(Castor bean)
Theobroma cacao(Matina 1-6)
Brassica napus
Spirodela polyrhiza(giant duckweed)
Solanum lycopersicum(tomato)