Schema for active RE - active regulatory elements

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Schema for active RE - active regulatory elements

Database: TAIR10 Primary Table: active_enhancer Row Count: 33,701 Data last updated: 2020-10-11

field	example	SQL type	info
`chrom`	chr1	`varchar(255)`	values
`chromStart`	3001	`int(10) unsigned`	range
`chromEnd`	3400	`int(10) unsigned`	range
`name`	2	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`thickStart`	3001	`int(10) unsigned`	range
`thickEnd`	3400	`int(10) unsigned`	range
`itemRgb`	15498601	`int(10) unsigned`	range

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	itemRgb
chr1	3001	3400	2	0	.	3001	3400	236,125,105
chr1	8401	9000	3	0	.	8401	9000	180,0,30
chr1	13401	14000	3	0	.	13401	14000	180,0,30
chr1	14001	14200	2	0	.	14001	14200	236,125,105
chr1	14601	15000	2	0	.	14601	15000	236,125,105
chr1	19601	21200	2	0	.	19601	21200	236,125,105
chr1	21401	21800	2	0	.	21401	21800	236,125,105
chr1	22801	23400	3	0	.	22801	23400	180,0,30
chr1	32601	33000	3	0	.	32601	33000	180,0,30
chr1	33401	33800	3	0	.	33401	33800	180,0,30

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.