This tool converts genome coordinates and genome annotation files between assemblies. The input data can be pasted into the text box, or uploaded from a file. If a pair of assemblies cannot be selected from the pull-down menus, a direct lift between them is unavailable. However, a sequential lift may be possible. Example: lift from Mouse, May 2004, to Mouse, Feb. 2006, and then from Mouse, Feb. 2006 to Mouse, July 2007 to achieve a lift from mm5 to mm9.
Command Line Tool
To lift genome annotations locally on Linux systems, download the liftOver executable and the appropriate chain file. Run liftOver with no arguments to see the usage message.