31	LOC_Os01g30932	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16866854	16869246	-	CDS,promoter,downstream
31	LOC_Os07g05790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	2785583	2787424	+	CDS,promoter,downstream
31	LOC_Os01g21210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11830581	11838029	+	CDS
31	LOC_Os05g19430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11285745	11288468	+	CDS,promoter,downstream
31	LOC_Os05g20920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12301035	12303268	+	CDS,promoter,downstream
31	LOC_Os10g16400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8104088	8104993	-	CDS,promoter,downstream
31	LOC_Os04g16100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8728819	8736307	-	CDS,promoter
31	LOC_Os07g22180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12382641	12384137	-	CDS,promoter,downstream
31	LOC_Os04g18620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10286732	10289936	-	CDS,promoter,downstream
31	LOC_Os04g25470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14752994	14760563	+	CDS,promoter
31	LOC_Os01g15934	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8972604	8977182	-	CDS
31	LOC_Os04g17930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9846835	9847913	-	CDS,promoter,downstream
31	LOC_Os06g34140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19884352	19891327	+	CDS
31	LOC_Os04g18490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10213324	10216531	+	CDS,promoter,downstream
31	LOC_Os04g17830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9766398	9767748	+	CDS,promoter,downstream
31	LOC_Os05g21220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12473270	12473982	-	CDS,promoter,downstream
31	LOC_Os04g18690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10342133	10348185	+	CDS,promoter,downstream
31	LOC_Os04g18410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10156631	10162786	+	CDS,promoter,downstream
31	LOC_Os04g17860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9796658	9801142	-	CDS,promoter,downstream
31	LOC_Os09g05050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2715010	2715649	+	CDS,promoter
31	LOC_Os05g21130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12431533	12434844	-	CDS,promoter,downstream
31	LOC_Os03g43160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24077369	24080904	+	CDS,downstream
31	LOC_Os04g17250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9450463	9453207	-	CDS,promoter
31	LOC_Os01g29530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16550813	16556786	-	CDS,promoter
31	LOC_Os06g28410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16161417	16163522	+	CDS,promoter,downstream
31	LOC_Os06g24440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14318274	14324852	+	CDS
31	LOC_Os08g22026	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13253475	13257271	+	CDS,promoter,downstream
31	LOC_Os12g20450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11937717	11941391	-	CDS
31	LOC_Os08g21200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12654665	12658172	+	CDS,promoter
31	LOC_Os07g22110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12356122	12358655	+	CDS,promoter,downstream
31	LOC_Os01g69000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	40083351	40084706	+	CDS,promoter
31	LOC_Os07g28390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	16593295	16594007	-	CDS,promoter
31	LOC_Os04g22570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12765213	12772573	-	CDS
31	LOC_Os04g17750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9713941	9717082	+	CDS,promoter,downstream
31	LOC_Os11g12720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	7178387	7179099	-	CDS
31	LOC_Os08g22370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13485734	13488257	-	CDS,promoter,downstream
31	LOC_Os08g22570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13584464	13586243	-	CDS,promoter,downstream
31	LOC_Os08g39410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	24914654	24920628	-	CDS
31	LOC_Os06g39190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23264599	23269781	+	CDS,downstream
31	LOC_Os02g06550	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr2	3270601	3271305	-	CDS
31	LOC_Os05g22330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12575852	12582590	+	CDS,promoter,downstream
31	LOC_Os04g16468	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	8949953	8950665	-	CDS,promoter,downstream
31	LOC_Os09g06450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3033999	3039037	-	CDS
31	LOC_Os08g22006	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13200488	13205263	-	CDS,promoter,downstream
31	LOC_Os08g22036	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13267754	13271927	-	CDS,promoter,downstream
31	LOC_Os04g34880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21006308	21007468	+	CDS,downstream
31	LOC_Os09g14990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8993602	8997253	+	CDS,downstream
31	LOC_Os05g21070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12388493	12391220	-	CDS,promoter,downstream
31	LOC_Os10g14940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7846680	7847291	+	CDS
31	LOC_Os04g16250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8817455	8823975	+	CDS,promoter,downstream
31	LOC_Os01g28560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15985552	15986519	-	CDS,downstream
31	LOC_Os03g56040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	31903607	31905778	+	CDS,promoter
31	LOC_Os07g20810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12034020	12037755	+	CDS,promoter,downstream
31	LOC_Os04g16870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9229348	9230598	-	CDS,promoter,downstream
31	LOC_Os08g22600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13592830	13593544	-	CDS,promoter
31	LOC_Os08g04080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1977617	1979806	-	CDS,downstream
31	LOC_Os09g03300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1585681	1599315	+	CDS
31	LOC_Os11g25380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14001006	14005232	+	CDS,downstream
31	LOC_Os01g30970	PMR5, putative, expressed	gene	PMR5, putative, expressed	chr1	16927572	16928674	+	CDS,three_prime_UTR,promoter,downstream
31	LOC_Os08g21160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12639370	12643476	-	CDS,promoter,downstream
31	LOC_Os01g54820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	31528721	31531943	+	CDS,downstream
31	LOC_Os10g11794	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6534940	6546489	+	CDS
31	LOC_Os05g08650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4737298	4739333	-	CDS,downstream
31	LOC_Os08g21849	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13077012	13077665	+	CDS,promoter,downstream
31	LOC_Os08g20140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12069768	12070480	+	CDS,downstream
31	LOC_Os08g21920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13125697	13134377	+	CDS,promoter,downstream
31	LOC_Os08g21820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13057250	13058404	-	CDS,promoter,downstream
31	LOC_Os08g21680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12914062	12918006	+	CDS,promoter,downstream
31	LOC_Os04g17600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9606317	9607609	+	CDS,promoter,downstream
31	LOC_Os08g21930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13142702	13147715	+	CDS,promoter,downstream
31	LOC_Os01g39190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	22045060	22050693	+	CDS
31	LOC_Os12g21540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12107199	12109346	+	CDS,promoter
31	LOC_Os04g17400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9509659	9511577	-	CDS,promoter,downstream
31	LOC_Os02g17790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10292506	10294000	-	CDS
31	LOC_Os08g22810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13707156	13710015	-	CDS,promoter,downstream
31	LOC_Os10g01020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	27689	35752	-	CDS
31	LOC_Os08g21690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12954994	12961258	+	CDS,promoter
31	LOC_Os01g31430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17185875	17189057	-	CDS,promoter
31	LOC_Os08g22054	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13309375	13316221	-	CDS,promoter,downstream
31	LOC_Os08g21780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13038183	13040067	-	CDS,promoter,downstream
31	LOC_Os07g22050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12325536	12327709	+	CDS
31	LOC_Os08g22034	hypothetical protein	gene	hypothetical protein	chr8	13266953	13267181	+	CDS,promoter,downstream
31	LOC_Os04g17810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9757570	9758284	+	CDS,promoter,downstream
31	LOC_Os01g31240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17081625	17085372	+	CDS,promoter
31	LOC_Os11g22060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12215138	12215563	-	CDS,downstream
31	LOC_Os10g26230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13516585	13517892	-	CDS
31	LOC_Os08g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12149892	12155387	-	CDS,downstream
31	LOC_Os07g20640	hypothetical protein	gene	hypothetical protein	chr7	11926265	11926506	-	CDS,promoter,downstream
31	LOC_Os02g37460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	22608422	22609936	+	CDS,downstream
31	LOC_Os08g16960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10382450	10384891	+	CDS,promoter
31	LOC_Os01g57810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33434825	33438031	-	CDS,downstream
31	LOC_Os04g29870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17630396	17637668	+	CDS
31	LOC_Os04g17560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9587577	9591027	+	CDS,promoter,downstream
31	LOC_Os02g16280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9263254	9267577	+	CDS,promoter
31	LOC_Os07g20900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12094498	12094893	-	CDS,promoter,downstream
31	LOC_Os07g29500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17316986	17320814	-	CDS,downstream
31	LOC_Os07g20720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11973851	11988988	-	CDS,promoter,downstream
31	LOC_Os12g10120	ligA, putative	gene	ligA, putative	chr12	5355356	5355805	+	CDS,downstream
31	LOC_Os04g21280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11992756	11996423	-	CDS,downstream
31	LOC_Os05g21170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12445024	12451179	-	CDS,promoter,downstream
31	LOC_Os06g15280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8671785	8673347	+	CDS
31	LOC_Os07g20800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12031002	12031474	+	CDS,promoter,downstream
31	LOC_Os07g20870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12072228	12072874	+	CDS,promoter,downstream
31	LOC_Os03g37554	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	20825078	20832246	-	CDS
31	LOC_Os04g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13972212	13972868	-	CDS,promoter,downstream
31	LOC_Os08g22410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13520135	13523135	+	CDS,promoter,downstream
31	LOC_Os10g16500	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	8157635	8158432	+	CDS,promoter,downstream
31	LOC_Os11g28970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16297297	16298919	-	CDS
31	LOC_Os08g20907	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12526085	12529584	-	CDS
31	LOC_Os05g22760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12853644	12856054	-	CDS,downstream
31	LOC_Os09g02980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	1397351	1398655	+	CDS
31	LOC_Os01g58160	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	33632176	33634299	+	CDS,downstream
31	LOC_Os08g17194	unknown	gene	unknown	chr8	10533898	10538932	+	five_prime_UTR
31	LOC_Os07g25210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14402883	14412413	-	CDS
31	LOC_Os05g22400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12653711	12654227	+	CDS,promoter,downstream
31	LOC_Os04g17910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9839676	9841393	-	CDS,promoter,downstream
31	LOC_Os05g20840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12236051	12241633	-	CDS,promoter,downstream
31	LOC_Os02g47720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29164890	29168068	+	CDS
31	LOC_Os12g15130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8628222	8629619	-	CDS,promoter
31	LOC_Os01g34310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18909520	18916935	+	CDS
31	LOC_Os11g23040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12784730	12789576	-	CDS
31	LOC_Os01g30936	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16869993	16874308	-	CDS,promoter,downstream
31	LOC_Os04g18440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10174532	10175384	+	CDS,promoter,downstream
31	LOC_Os07g22430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12605763	12612590	-	CDS
31	LOC_Os07g21960	expressed protein	gene	expressed protein	chr7	12281889	12283703	+	CDS,promoter,downstream
31	LOC_Os07g20660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11932690	11935690	+	CDS,promoter,downstream
31	LOC_Os05g13380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7424627	7428996	-	CDS,downstream
31	LOC_Os08g25190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15300003	15308394	+	CDS
31	LOC_Os08g22230	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr8	13402150	13404008	-	CDS,promoter
31	LOC_Os05g20954	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	12324776	12327620	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
31	LOC_Os07g22000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12301240	12309919	-	CDS,promoter
31	LOC_Os07g20920	hypothetical protein	gene	hypothetical protein	chr7	12104909	12105463	-	CDS,promoter,downstream
31	LOC_Os08g20150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12071929	12074072	+	CDS,promoter
31	LOC_Os04g17520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9576850	9577562	-	CDS,promoter,downstream
31	LOC_Os10g16520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8164444	8166216	+	CDS,promoter
31	LOC_Os01g33460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18424399	18429721	+	CDS
31	LOC_Os07g20690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11955105	11958029	-	CDS,promoter,downstream
31	LOC_Os07g12000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6649980	6653738	-	CDS,promoter
31	LOC_Os04g17760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9717555	9723698	-	CDS,promoter,downstream
31	LOC_Os09g14810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8818281	8821214	-	CDS,downstream
31	LOC_Os12g20470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11957327	11963091	+	CDS,promoter
31	LOC_Os03g35650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19744528	19747012	+	CDS,downstream
31	LOC_Os05g22390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12641724	12651166	-	CDS,promoter,downstream
31	LOC_Os07g20750	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12005256	12007371	-	CDS,promoter,downstream
31	LOC_Os01g31040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	16975660	16978058	+	CDS,promoter
31	LOC_Os06g35210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20533183	20540697	+	CDS,downstream
31	LOC_Os05g41350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	24161291	24163452	+	CDS,promoter
31	LOC_Os02g22790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13572273	13578057	-	CDS,promoter,downstream
31	LOC_Os08g20370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12235809	12241969	+	CDS
31	LOC_Os09g05070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2725587	2730585	+	CDS,promoter,downstream
31	LOC_Os08g22460	unknown	gene	unknown	chr8	13541954	13542658	+	CDS,promoter,downstream
31	LOC_Os04g17370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9502189	9505377	+	CDS,promoter,downstream
31	LOC_Os04g17610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9621135	9624422	+	CDS,promoter,downstream
31	LOC_Os05g36040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	21274483	21278171	+	CDS,promoter
31	LOC_Os08g21980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	13170448	13171879	+	CDS,promoter,downstream
31	LOC_Os03g33950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19371798	19374360	+	CDS
31	LOC_Os10g07150	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	3749155	3751599	-	three_prime_UTR
31	LOC_Os05g20750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	12177272	12182296	-	CDS,promoter,downstream
31	LOC_Os04g13800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7690853	7694386	+	CDS,downstream
31	LOC_Os05g21140	hypothetical protein	gene	hypothetical protein	chr5	12438421	12439020	+	CDS,promoter,downstream
31	LOC_Os08g21434	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12776261	12780114	+	CDS,promoter,downstream
31	LOC_Os08g28720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17562290	17563522	-	CDS,downstream
31	LOC_Os09g01400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	315579	316871	+	CDS,promoter
31	LOC_Os02g16010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	9089342	9095713	+	CDS,downstream
31	LOC_Os11g47430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	28003111	28009266	-	CDS,downstream
31	LOC_Os07g10050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5368823	5374526	+	CDS
31	LOC_Os02g22800	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	13582299	13588851	-	CDS,promoter
31	LOC_Os04g18040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9955238	9959558	+	CDS,promoter
31	LOC_Os07g13560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7772011	7778420	+	CDS
31	LOC_Os07g26190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15058881	15061675	-	CDS,downstream
31	LOC_Os04g21410	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	12087447	12092577	-	CDS
31	LOC_Os03g33530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19151290	19159384	-	CDS
31	LOC_Os09g07230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3534759	3542841	+	CDS
31	LOC_Os09g05090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2738488	2739510	+	CDS,promoter,downstream
31	LOC_Os05g20630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12101052	12105444	-	CDS
31	LOC_Os04g17320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9479029	9485622	+	CDS,promoter,downstream
31	LOC_Os08g26390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16079631	16080997	-	CDS
31	LOC_Os08g21400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12762208	12762650	+	CDS,promoter,downstream
31	LOC_Os09g06300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2948261	2949567	+	CDS
31	LOC_Os03g30450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	17363005	17371169	-	CDS
31	LOC_Os01g51820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	29788922	29795800	+	CDS
31	LOC_Os02g49120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30028827	30033963	-	CDS
31	LOC_Os01g64060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37203812	37205080	-	CDS,promoter
31	LOC_Os08g22820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13716050	13722714	+	CDS,promoter,downstream
31	LOC_Os06g28010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15900365	15901077	+	CDS,promoter,downstream
31	LOC_Os04g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10149754	10155200	+	CDS,promoter,downstream
31	LOC_Os10g17580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8808273	8810046	-	CDS,downstream
31	LOC_Os07g17700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10448017	10450960	+	CDS
31	LOC_Os08g22750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13674289	13676975	+	CDS,promoter,downstream
31	LOC_Os10g01850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	550383	557111	-	CDS,downstream
31	LOC_Os10g36590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19503403	19506360	-	CDS
31	LOC_Os06g09780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	4978156	4979997	-	CDS,promoter
31	LOC_Os04g18570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10243242	10247172	+	CDS,promoter,downstream
31	LOC_Os05g21190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12463647	12466010	+	CDS,promoter,downstream
31	LOC_Os08g21940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13150704	13153292	-	CDS,promoter,downstream
31	LOC_Os06g22580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13134270	13135331	+	CDS,downstream
31	LOC_Os01g57800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33427557	33434372	+	CDS,downstream
31	LOC_Os06g28140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	15976245	15980223	-	CDS,downstream
31	LOC_Os07g06120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2966719	2969723	-	CDS,promoter
31	LOC_Os06g27630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	15628986	15630821	-	CDS,promoter
31	LOC_Os10g20440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10215221	10220939	+	CDS,promoter
31	LOC_Os05g15020	hypothetical protein	gene	hypothetical protein	chr5	8514402	8514950	+	CDS,promoter
31	LOC_Os06g16470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9456444	9457936	+	CDS,promoter,downstream
31	LOC_Os06g25920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15174784	15175495	+	CDS,promoter,downstream
31	LOC_Os08g22284	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13428180	13433458	-	CDS,promoter,downstream
31	LOC_Os04g18600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10264974	10270465	+	CDS,promoter
31	LOC_Os07g20860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12063095	12066184	-	CDS,promoter,downstream
31	LOC_Os07g27070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15682108	15690068	+	CDS
31	LOC_Os10g24920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12756832	12761179	-	CDS
31	LOC_Os01g51830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	29796502	29799524	-	CDS
31	LOC_Os07g22129	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12368207	12368686	+	CDS,promoter,downstream
31	LOC_Os04g16810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9205686	9213213	-	CDS,downstream
31	LOC_Os05g20810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12212148	12213210	-	CDS,promoter,downstream
31	LOC_Os07g18640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11019867	11021420	+	CDS,promoter
31	LOC_Os04g18420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10164157	10166717	-	CDS,promoter,downstream
31	LOC_Os03g34129	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19440048	19442069	-	CDS
31	LOC_Os08g22024	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13247697	13249842	+	CDS,promoter,downstream
31	LOC_Os07g15840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	9201355	9203918	-	CDS
31	LOC_Os03g38880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21602787	21606241	-	CDS
31	LOC_Os04g17970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9873639	9874617	+	CDS,promoter,downstream
31	LOC_Os03g32840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18784837	18785304	+	CDS,promoter,downstream
31	LOC_Os01g11720	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	gene	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	chr1	6327086	6332412	-	CDS,promoter
31	LOC_Os09g06390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3009380	3014065	+	CDS,promoter
31	LOC_Os08g21170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12643866	12647269	+	CDS,promoter,downstream
31	LOC_Os05g21150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12440074	12440589	-	CDS,promoter,downstream
31	LOC_Os08g22440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13536602	13537180	-	CDS,promoter,downstream
31	LOC_Os01g54830	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	31532296	31539010	-	CDS,promoter
31	LOC_Os01g58710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33936707	33941955	+	CDS,downstream
31	LOC_Os06g27350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15456437	15458581	+	CDS,promoter
31	LOC_Os09g07130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3481721	3484685	+	CDS
31	LOC_Os03g26890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15350311	15355510	-	CDS
31	LOC_Os03g34210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19477499	19481159	+	CDS,downstream
31	LOC_Os02g24680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14309077	14314123	-	CDS
31	LOC_Os01g36800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20471764	20473820	+	CDS,promoter
31	LOC_Os04g18540	hAT dimerisation domain containing protein, putative	gene	hAT dimerisation domain containing protein, putative	chr4	10234503	10234952	-	CDS,promoter,downstream
31	LOC_Os08g35290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22267361	22269174	-	CDS,downstream
31	LOC_Os07g25230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14419666	14422601	-	CDS
31	LOC_Os05g21160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12443169	12444407	+	CDS,promoter,downstream
31	LOC_Os02g24880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14419839	14422070	-	CDS
31	LOC_Os05g21060	hypothetical protein	gene	hypothetical protein	chr5	12387483	12387725	+	CDS,promoter,downstream
31	LOC_Os04g18770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10426309	10431642	+	CDS,promoter
31	LOC_Os08g07570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4253524	4255334	-	CDS
31	LOC_Os08g21460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12787779	12791609	+	CDS,promoter,downstream
31	LOC_Os08g22270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13418143	13422666	-	CDS,promoter,downstream
31	LOC_Os03g35788	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19832246	19841974	-	CDS,promoter
31	LOC_Os09g14940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8946349	8947122	-	CDS,downstream
31	LOC_Os07g22280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12486460	12490558	-	CDS
31	LOC_Os05g16260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9202629	9205769	+	CDS
31	LOC_Os10g17190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8562208	8562997	+	CDS,promoter
31	LOC_Os04g50172	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29748131	29752771	-	CDS
31	LOC_Os08g21280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12696346	12700137	-	CDS,promoter
31	LOC_Os09g06270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2942022	2945045	-	CDS,promoter
31	LOC_Os02g27380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16130523	16138359	+	CDS
31	LOC_Os05g21010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12361365	12362108	-	CDS,promoter,downstream
31	LOC_Os04g18630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10291493	10292195	-	CDS,promoter,downstream
31	LOC_Os05g20940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12313312	12315397	+	CDS,downstream
31	LOC_Os01g31010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16956111	16957745	-	CDS,promoter,downstream
31	LOC_Os12g34730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21054393	21056983	+	CDS
31	LOC_Os06g39150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23247166	23247996	+	CDS,promoter,downstream
31	LOC_Os04g18390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	10142493	10148388	-	CDS,downstream
31	LOC_Os01g33204	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	18283558	18287832	+	CDS,three_prime_UTR,downstream
31	LOC_Os08g22520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13563513	13565758	+	CDS,promoter,downstream
31	LOC_Os06g28070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15937011	15941287	+	CDS,downstream
31	LOC_Os11g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12613560	12615122	+	CDS,promoter,downstream
31	LOC_Os04g17180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9415472	9417129	-	CDS,promoter,downstream
31	LOC_Os04g04930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2370073	2373393	+	CDS,downstream
31	LOC_Os08g22780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13687860	13693917	-	CDS,promoter,downstream
31	LOC_Os04g17550	hypothetical protein	gene	hypothetical protein	chr4	9585391	9586752	-	CDS,promoter,downstream
31	LOC_Os02g28550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16883301	16887117	+	CDS
31	LOC_Os07g22960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12930686	12949090	-	CDS
31	LOC_Os04g13080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7209171	7213571	-	CDS
31	LOC_Os11g32180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18535426	18542280	-	CDS
31	LOC_Os08g22540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13569261	13573738	-	CDS,promoter,downstream
31	LOC_Os08g30990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19127357	19134918	+	CDS
31	LOC_Os12g37470	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	22962177	22964983	-	CDS,downstream
31	LOC_Os04g12864	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7106585	7110278	+	CDS,promoter,downstream
31	LOC_Os08g22012	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13218976	13225820	-	CDS,promoter,downstream
31	LOC_Os01g20740	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	11548950	11551618	-	CDS,downstream
31	LOC_Os08g21970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13165472	13168663	-	CDS,promoter,downstream
31	LOC_Os11g04620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1962165	1964246	+	CDS,promoter
31	LOC_Os10g15240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8006105	8010060	+	CDS,promoter,downstream
31	LOC_Os08g30050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18465641	18470423	+	CDS
31	LOC_Os08g14290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8559664	8563467	+	CDS,downstream
31	LOC_Os07g24840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14122798	14125904	+	CDS
31	LOC_Os05g22420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12668966	12669988	+	CDS,promoter,downstream
31	LOC_Os10g16419	unknown	gene	unknown	chr10	8115725	8117387	+	CDS,promoter,downstream
31	LOC_Os08g22690	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13643849	13646500	-	CDS,promoter,downstream
31	LOC_Os08g17040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10431510	10441532	+	CDS
31	LOC_Os11g27100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15130683	15132832	+	CDS,promoter
31	LOC_Os04g17798	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9744695	9745406	-	CDS,promoter,downstream
31	LOC_Os02g19620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11455619	11460968	-	CDS,promoter
31	LOC_Os07g20880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12074488	12081715	-	CDS,promoter,downstream
31	LOC_Os12g29100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17221061	17225626	+	CDS
31	LOC_Os05g15660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8857315	8859824	+	CDS,promoter
31	LOC_Os04g17620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9632677	9638036	+	CDS,promoter,downstream
31	LOC_Os09g06240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2932916	2933486	+	CDS,downstream
31	LOC_Os08g22430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13531628	13534819	+	CDS,promoter,downstream
31	LOC_Os08g22970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13813047	13813928	-	CDS,downstream
31	LOC_Os03g35400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19628358	19631221	-	CDS,promoter,downstream
31	LOC_Os11g26230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14551798	14560273	+	CDS,promoter
31	LOC_Os10g18630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9378406	9379275	+	CDS
31	LOC_Os01g30962	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16915152	16915865	+	CDS
31	LOC_Os01g31420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17180657	17184811	+	CDS
31	LOC_Os05g22450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12688079	12689215	-	CDS,promoter,downstream
31	LOC_Os11g47453	expressed protein	gene	expressed protein	chr11	28012323	28016674	-	three_prime_UTR,promoter
31	LOC_Os01g64080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37221675	37227965	-	CDS
31	LOC_Os04g17920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9843369	9845473	+	CDS,promoter,downstream
31	LOC_Os04g17280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9464955	9467945	-	CDS,promoter,downstream
31	LOC_Os06g28310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16075347	16084871	+	CDS
31	LOC_Os05g21090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12397046	12399735	-	CDS,promoter,downstream
31	LOC_Os01g31180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17044480	17046299	-	CDS,promoter
31	LOC_Os09g06180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2894556	2895859	+	CDS,promoter,downstream
31	LOC_Os03g29940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17058882	17065508	+	CDS
31	LOC_Os03g47564	expressed protein	gene	expressed protein	chr3	26891332	26892579	+	three_prime_UTR,downstream
31	LOC_Os10g01008	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8752	11288	+	CDS,downstream
31	LOC_Os04g16459	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8946336	8948482	-	CDS,downstream
31	LOC_Os08g21480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12800569	12803887	+	CDS,promoter,downstream
31	LOC_Os07g20890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12083452	12089846	+	CDS,promoter,downstream
31	LOC_Os05g21080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12393261	12395308	-	CDS,promoter,downstream
31	LOC_Os12g16060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9151798	9158333	-	CDS
31	LOC_Os08g17010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10420313	10423589	+	CDS
31	LOC_Os02g29670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17655544	17658453	+	CDS,downstream
31	LOC_Os06g15300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8678903	8681755	+	CDS,downstream
31	LOC_Os04g17210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9426640	9428906	+	CDS,promoter,downstream
31	LOC_Os05g20560	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	12063627	12065147	+	five_prime_UTR,CDS,promoter
31	LOC_Os05g15640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	8851284	8851996	+	CDS,promoter
31	LOC_Os05g21180	phosphatidic acid phosphatase-related, putative, expressed	gene	phosphatidic acid phosphatase-related, putative, expressed	chr5	12453173	12457726	+	three_prime_UTR,promoter,downstream
31	LOC_Os04g16880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9232414	9233317	-	CDS,promoter,downstream
31	LOC_Os06g27410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15513286	15514553	+	CDS,promoter,downstream
31	LOC_Os10g15079	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7907111	7915152	-	CDS
31	LOC_Os05g22520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12729038	12733947	+	CDS,promoter,downstream
31	LOC_Os12g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12364635	12366152	+	CDS,promoter
31	LOC_Os03g13680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7396783	7399813	-	CDS
31	LOC_Os09g04840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2576149	2578620	-	CDS
31	LOC_Os07g21970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12289022	12290336	-	CDS,promoter,downstream
31	LOC_Os04g17510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9569029	9575389	-	CDS,promoter,downstream
31	LOC_Os03g47570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	26893201	26896009	-	CDS,promoter
31	LOC_Os08g21710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13008305	13010422	+	CDS,promoter,downstream
31	LOC_Os08g22770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13686440	13687664	+	CDS,promoter,downstream
31	LOC_Os04g18300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10097101	10098129	-	CDS,promoter,downstream
31	LOC_Os03g40820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22692615	22695204	+	CDS
31	LOC_Os04g17840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9772029	9777537	-	CDS,promoter,downstream
31	LOC_Os07g22170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12379014	12382210	+	CDS,downstream
31	LOC_Os02g20660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	12172293	12177893	-	CDS
31	LOC_Os07g28310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16531604	16533685	-	CDS,promoter
31	LOC_Os08g21210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12659342	12663401	-	CDS,downstream
31	LOC_Os05g21120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12418084	12430058	+	CDS,promoter,downstream
31	LOC_Os04g27520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16094889	16100981	-	CDS,promoter,downstream
31	LOC_Os02g24550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14218708	14223921	+	CDS
31	LOC_Os07g23980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13572475	13576160	+	CDS
31	LOC_Os01g28130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15746281	15752460	-	CDS,downstream
31	LOC_Os04g17440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9529269	9535424	-	CDS,promoter,downstream
31	LOC_Os04g17590	hypothetical protein	gene	hypothetical protein	chr4	9603472	9603855	+	CDS,promoter,downstream
31	LOC_Os02g07500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3879912	3882999	+	CDS
31	LOC_Os08g21100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12605685	12606813	-	CDS,promoter,downstream
31	LOC_Os04g17300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9474732	9475913	+	CDS,promoter,downstream
31	LOC_Os06g26140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15293147	15294511	+	CDS,promoter
31	LOC_Os05g21030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12370272	12371181	-	CDS,promoter,downstream
31	LOC_Os02g19870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11674414	11684362	-	CDS
31	LOC_Os08g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13615216	13619678	-	CDS,promoter,downstream
31	LOC_Os05g32340	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	18792582	18796906	+	CDS
31	LOC_Os08g21520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12820017	12822086	+	CDS,promoter
31	LOC_Os07g06110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2959238	2966200	+	CDS,downstream
31	LOC_Os08g02760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1161245	1163123	-	CDS,downstream
31	LOC_Os04g17500	expressed protein	gene	expressed protein	chr4	9561987	9567962	-	CDS,promoter,downstream
31	LOC_Os07g25630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14690477	14697397	+	CDS,downstream
31	LOC_Os02g18230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10581544	10585823	-	CDS,downstream
31	LOC_Os12g24110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13710442	13717175	+	CDS
31	LOC_Os11g23200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12890679	12895014	-	CDS
31	LOC_Os04g27510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16093094	16094268	+	CDS,promoter,downstream
31	LOC_Os08g22500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13552973	13555354	+	CDS,promoter,downstream
31	LOC_Os08g21810	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13054939	13056242	-	CDS,promoter,downstream
31	LOC_Os08g22620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13605304	13610001	+	CDS,downstream
31	LOC_Os11g47420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27999185	28002486	+	CDS,promoter
31	LOC_Os08g21830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13060825	13061427	+	CDS,promoter
31	LOC_Os12g21470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12010366	12012512	+	CDS,promoter
31	LOC_Os04g17640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9647235	9651375	+	CDS,promoter,downstream
31	LOC_Os07g20650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11930789	11931043	-	CDS,promoter,downstream
31	LOC_Os04g17770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9724467	9728800	+	CDS,promoter,downstream
31	LOC_Os07g20560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11877647	11882355	-	CDS,promoter
31	LOC_Os08g22650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13621616	13627885	+	CDS,promoter,downstream
31	LOC_Os04g17190	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr4	9419651	9422881	+	CDS,promoter,downstream
31	LOC_Os09g06220	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	2904168	2911471	-	CDS,three_prime_UTR,promoter
31	LOC_Os11g20710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11991941	11992653	+	CDS,downstream
31	LOC_Os11g12660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	7128967	7134091	+	CDS
31	LOC_Os04g17660	rhodanese-like domain containing protein, putative, expressed	gene	rhodanese-like domain containing protein, putative, expressed	chr4	9661927	9664845	-	CDS,three_prime_UTR,promoter
31	LOC_Os04g18700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10349099	10358239	-	CDS,downstream
31	LOC_Os06g07730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	3741797	3742687	-	CDS
31	LOC_Os08g18800	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11214417	11216650	+	CDS
31	LOC_Os04g17530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9578936	9579418	-	CDS,promoter,downstream
31	LOC_Os02g22180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13210030	13213776	+	CDS
31	LOC_Os11g14330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8034645	8041864	-	CDS,promoter
31	LOC_Os04g18610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10282117	10285515	+	CDS,promoter,downstream
31	LOC_Os12g21490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12064274	12065537	-	CDS,promoter,downstream
31	LOC_Os04g17420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9520854	9521741	-	CDS,promoter,downstream
31	LOC_Os04g18720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10374382	10375096	-	CDS,downstream
31	LOC_Os07g24850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14128586	14132005	+	CDS
31	LOC_Os04g14580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8171029	8181253	+	CDS
31	LOC_Os08g20952	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12544468	12547023	+	CDS,downstream
31	LOC_Os04g17780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9733681	9737987	-	CDS,promoter,downstream
31	LOC_Os08g22030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13299597	13304841	+	CDS,promoter,downstream
31	LOC_Os08g21420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12772569	12775808	+	CDS,promoter,downstream
31	LOC_Os05g22430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12678076	12679992	+	CDS,downstream
31	LOC_Os04g24440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14005780	14008800	-	CDS,promoter,downstream
31	LOC_Os07g25760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	14798800	14804295	-	CDS
31	LOC_Os12g26500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15487076	15491568	-	CDS,promoter
31	LOC_Os01g31350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17145744	17149950	+	CDS
31	LOC_Os07g20850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12060203	12062261	+	CDS,promoter,downstream
31	LOC_Os05g21100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12404494	12410679	+	CDS,promoter,downstream
31	LOC_Os07g11240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6186023	6193351	+	CDS
31	LOC_Os04g16590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9015347	9019150	+	CDS,downstream
31	LOC_Os04g17290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9471324	9472305	-	CDS,promoter,downstream
31	LOC_Os02g23822	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13733185	13735522	-	CDS,promoter,downstream
31	LOC_Os06g19150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10893814	10895881	+	CDS,promoter
31	LOC_Os05g22350	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12596968	12601238	-	CDS,promoter,downstream
31	LOC_Os06g07710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3732347	3735479	+	CDS
31	LOC_Os08g21250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12685166	12685933	-	CDS,promoter,downstream
31	LOC_Os06g27380	hypothetical protein	gene	hypothetical protein	chr6	15502222	15502875	+	CDS,promoter,downstream
31	LOC_Os08g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13397118	13398660	-	CDS,promoter
31	LOC_Os04g18520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10224097	10226473	-	CDS,promoter,downstream
31	LOC_Os05g20730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12162163	12164344	-	CDS,promoter,downstream
31	LOC_Os07g22200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12388653	12393974	-	CDS,promoter,downstream
31	LOC_Os08g21470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12793577	12794409	+	CDS,promoter,downstream
31	LOC_Os07g23700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13375043	13378796	-	CDS
31	LOC_Os08g22670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13635214	13636611	+	CDS,promoter,downstream
31	LOC_Os04g17330	hypothetical protein	gene	hypothetical protein	chr4	9487409	9487815	-	CDS,promoter,downstream
31	LOC_Os02g39780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24028487	24035461	-	CDS,promoter,downstream
31	LOC_Os11g22680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12583921	12588026	-	CDS
31	LOC_Os05g23590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13466324	13470904	-	CDS
31	LOC_Os08g18840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11242818	11245477	+	CDS
31	LOC_Os11g23750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12961797	12968226	+	CDS
31	LOC_Os11g18580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	10481918	10485656	+	CDS
31	LOC_Os04g18530	hypothetical protein	gene	hypothetical protein	chr4	10230901	10231224	-	CDS,promoter,downstream
31	LOC_Os02g29660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17652301	17654978	+	CDS,promoter,downstream
31	LOC_Os11g47443	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28094124	28098519	+	CDS
31	LOC_Os04g17380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9505785	9506303	-	CDS,promoter,downstream
31	LOC_Os05g21200	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12466637	12467998	+	CDS,promoter,downstream
31	LOC_Os10g15250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8010735	8017210	-	CDS,promoter
31	LOC_Os08g21695	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12968854	12970372	-	CDS,promoter
31	LOC_Os08g22250	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	13407699	13408376	+	CDS,promoter,downstream
31	LOC_Os04g17130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9372900	9383400	-	CDS,downstream
31	LOC_Os04g17140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9388533	9391034	+	CDS,promoter,downstream
31	LOC_Os04g17980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9874948	9877554	+	CDS,promoter,downstream
31	LOC_Os09g16860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10294411	10301773	+	CDS
31	LOC_Os07g29460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17300280	17304015	-	CDS
31	LOC_Os05g46874	hypothetical protein	gene	hypothetical protein	chr5	27067115	27072181	+	CDS,promoter
31	LOC_Os06g25790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15065319	15067170	+	CDS,downstream
31	LOC_Os04g18980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10532156	10544583	-	CDS
31	LOC_Os07g20770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12015062	12017012	+	CDS,promoter,downstream
31	LOC_Os04g44370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26083530	26089364	-	CDS,downstream
31	LOC_Os01g29120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16310226	16310927	-	CDS,promoter,downstream
31	LOC_Os04g16860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9225677	9227431	+	CDS,promoter,downstream
31	LOC_Os03g35454	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19654532	19663973	-	CDS
31	LOC_Os08g22300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13435827	13436090	-	CDS,promoter,downstream
31	LOC_Os06g28400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16159253	16159966	+	CDS,promoter,downstream
31	LOC_Os04g24430	sucrose synthase, putative, expressed	gene	sucrose synthase, putative, expressed	chr4	13998960	14004155	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
31	LOC_Os03g31992	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18297675	18299050	+	CDS,downstream
31	LOC_Os03g35326	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19543006	19547607	+	CDS,promoter
31	LOC_Os01g25650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14534554	14541945	+	CDS
31	LOC_Os07g20390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11769717	11771011	-	CDS
31	LOC_Os08g21860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13081127	13087789	-	CDS,promoter,downstream
31	LOC_Os01g64050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37200207	37203367	+	CDS,downstream
31	LOC_Os05g22540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12742328	12745443	-	CDS,promoter,downstream
31	LOC_Os07g20190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11652772	11654521	-	CDS,downstream
31	LOC_Os08g18210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11157756	11162418	-	CDS
31	LOC_Os02g39680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23964108	23966213	+	CDS,promoter
31	LOC_Os09g08020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4127221	4132305	-	CDS
31	LOC_Os10g26220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13511383	13514221	-	CDS
31	LOC_Os04g18480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10203426	10208156	+	CDS,promoter,downstream
31	LOC_Os03g29430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16770016	16774308	-	CDS
31	LOC_Os08g21990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13175591	13179920	-	CDS,promoter,downstream
31	LOC_Os01g29920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16843014	16843630	-	CDS,promoter,downstream
31	LOC_Os07g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13658846	13669258	+	CDS
31	LOC_Os11g22320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12331110	12331822	-	CDS,promoter
31	LOC_Os08g22480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13545406	13549868	+	CDS,promoter,downstream
31	LOC_Os11g23060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12798022	12807345	+	CDS
31	LOC_Os08g22008	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13209206	13214492	+	CDS,promoter,downstream
31	LOC_Os07g20840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12052986	12054713	-	CDS,promoter,downstream
31	LOC_Os11g05210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	2295691	2302619	-	CDS
31	LOC_Os05g22500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12720323	12722761	-	CDS,promoter,downstream
31	LOC_Os01g31070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16986609	16987947	+	CDS,promoter
31	LOC_Os06g25890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15137073	15142580	+	CDS,promoter,downstream
31	LOC_Os10g03180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1340736	1341779	+	CDS
31	LOC_Os04g18730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10379045	10387701	+	CDS
31	LOC_Os10g15210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7989557	7994871	+	CDS,promoter
31	LOC_Os01g56410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	32516663	32520963	+	CDS
31	LOC_Os04g17350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9495720	9497815	+	CDS,promoter,downstream
31	LOC_Os09g04580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2439452	2443776	+	CDS,promoter
31	LOC_Os01g29110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16305486	16308756	-	CDS,downstream
31	LOC_Os04g17470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9539746	9547615	+	CDS,promoter,downstream
31	LOC_Os10g05360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2642325	2644175	-	CDS,promoter
31	LOC_Os03g35560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19706928	19712245	+	CDS
31	LOC_Os08g22660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13630461	13632491	-	CDS,promoter,downstream
31	LOC_Os02g31000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18509668	18512734	-	CDS,promoter,downstream
31	LOC_Os04g18470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10195334	10201238	+	CDS,promoter,downstream
31	LOC_Os06g29260	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	16696275	16714448	+	three_prime_UTR,downstream
31	LOC_Os07g20820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12043133	12043618	+	CDS,promoter,downstream
31	LOC_Os07g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6458221	6465656	-	CDS
31	LOC_Os04g17170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9413071	9415071	-	CDS,promoter,downstream
31	LOC_Os07g22620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12730528	12735634	-	CDS
31	LOC_Os11g25390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14009244	14012533	+	CDS
31	LOC_Os07g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12291192	12294860	-	CDS,promoter,downstream
31	LOC_Os01g58720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33942533	33945565	-	CDS,promoter
31	LOC_Os09g29000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17624640	17629210	-	CDS,downstream
31	LOC_Os11g11850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6570036	6571201	+	CDS,downstream
31	LOC_Os03g37500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20803451	20810855	-	CDS
31	LOC_Os07g20680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11948590	11953247	+	CDS,promoter,downstream
31	LOC_Os01g31000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16953377	16955738	+	CDS,promoter,downstream
31	LOC_Os04g21290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11998621	12002366	-	CDS,promoter
31	LOC_Os10g16390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8099802	8103736	-	CDS,promoter,downstream
31	LOC_Os04g17900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9835572	9839072	+	CDS,downstream
31	LOC_Os07g24070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13646577	13648717	+	CDS,promoter
31	LOC_Os08g19120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	11429331	11431633	+	CDS,downstream
31	LOC_Os04g16130	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr4	8753188	8755990	+	CDS
31	LOC_Os05g26160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15163025	15166674	+	CDS
31	LOC_Os04g18450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10178694	10179805	+	CDS,promoter,downstream
31	LOC_Os05g20970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12333714	12340758	-	CDS,promoter,downstream
31	LOC_Os02g40470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24535169	24536827	-	CDS,downstream
31	LOC_Os07g20620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11916092	11919748	+	CDS,downstream
31	LOC_Os05g16970	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	9679483	9682618	-	CDS,promoter
31	LOC_Os08g26140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	15901073	15902188	-	CDS
31	LOC_Os04g18460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10184182	10190037	-	CDS,promoter,downstream
31	LOC_Os08g11110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6530149	6539432	-	CDS
31	LOC_Os04g18550	hypothetical protein	gene	hypothetical protein	chr4	10237764	10239001	+	CDS,promoter,downstream
31	LOC_Os03g23250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13450192	13456855	+	CDS,downstream
31	LOC_Os02g30160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17912237	17919538	+	CDS
31	LOC_Os07g22150	hypothetical protein	gene	hypothetical protein	chr7	12373990	12374226	-	CDS,downstream
31	LOC_Os03g39890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	22173838	22175620	-	CDS,downstream
31	LOC_Os07g20940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12110557	12112678	+	CDS,promoter
31	LOC_Os08g22790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13698324	13705853	+	CDS,promoter,downstream
31	LOC_Os05g22440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12680647	12684385	-	CDS,promoter,downstream
31	LOC_Os08g21110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12609285	12619533	-	CDS,promoter,downstream
31	LOC_Os02g19610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11447927	11451875	+	CDS
31	LOC_Os09g02950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1380149	1387439	+	CDS
31	LOC_Os04g18320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10103057	10103443	+	CDS,promoter,downstream
31	LOC_Os10g09250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5015967	5018157	-	CDS
31	LOC_Os07g20790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12027706	12028262	-	CDS,promoter,downstream
31	LOC_Os06g25840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15092625	15096289	-	CDS
31	LOC_Os11g23970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13120277	13125785	-	CDS,promoter,downstream
31	LOC_Os08g21390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12759222	12761127	+	CDS,promoter,downstream
31	LOC_Os07g25040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14276203	14281798	-	CDS
31	LOC_Os11g26220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14547525	14550283	+	CDS,downstream
31	LOC_Os04g17430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9525458	9528644	+	CDS,promoter,downstream
31	LOC_Os10g19980	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	9954497	9955677	+	CDS,promoter,downstream
31	LOC_Os02g30990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18504922	18508694	-	CDS,downstream
31	LOC_Os10g26210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13505056	13509577	+	CDS
31	LOC_Os05g20620	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	12093857	12102274	+	three_prime_UTR
31	LOC_Os05g20780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12201175	12202782	+	CDS,promoter,downstream
31	LOC_Os07g15760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9143169	9146364	-	CDS,promoter,downstream
31	LOC_Os08g21804	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13049566	13051853	+	CDS,promoter,downstream
31	LOC_Os06g30080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17330906	17334106	-	CDS
31	LOC_Os08g22389	hypothetical protein	gene	hypothetical protein	chr8	13502889	13503169	+	CDS,promoter,downstream
31	LOC_Os08g30400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18695240	18699579	+	CDS
31	LOC_Os04g18330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10105187	10112921	+	CDS,promoter,downstream
31	LOC_Os04g17730	hypothetical protein	gene	hypothetical protein	chr4	9704894	9706374	-	CDS,promoter,downstream
31	LOC_Os03g36130	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	20041297	20046102	-	five_prime_UTR,three_prime_UTR
31	LOC_Os05g20850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12243625	12245651	+	CDS,promoter,downstream
31	LOC_Os08g22022	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13245517	13246230	+	CDS,promoter,downstream
31	LOC_Os08g18740	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	11186668	11191962	+	CDS,downstream
31	LOC_Os08g21654	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12900006	12900949	-	CDS,promoter,downstream
31	LOC_Os08g21000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12562387	12564690	+	CDS,promoter,downstream
31	LOC_Os04g17950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9861744	9862883	-	CDS,promoter,downstream
31	LOC_Os08g21960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13161477	13165268	+	CDS,promoter,downstream
31	LOC_Os12g14830	hydrolase, putative	gene	hydrolase, putative	chr12	8484033	8488283	+	CDS
31	LOC_Os03g33700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19271175	19273341	-	CDS
31	LOC_Os04g14830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8322715	8328486	-	CDS,downstream
31	LOC_Os05g20890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12267292	12269615	-	CDS,promoter,downstream
31	LOC_Os04g17650	sucrose synthase, putative, expressed	gene	sucrose synthase, putative, expressed	chr4	9652632	9657755	-	CDS,three_prime_UTR,promoter,downstream
31	LOC_Os03g31542	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17970626	17974242	+	CDS,promoter
31	LOC_Os11g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12500744	12506547	-	CDS
31	LOC_Os07g20500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11835614	11837623	-	CDS
31	LOC_Os06g27400	hypothetical protein	gene	hypothetical protein	chr6	15510722	15512216	-	CDS,downstream
31	LOC_Os09g04460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2370253	2378520	+	CDS,promoter
31	LOC_Os09g04570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2435804	2438580	+	CDS,downstream
31	LOC_Os11g20720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11994124	11995983	+	CDS,promoter,downstream
31	LOC_Os08g21770	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13033220	13037369	-	CDS,downstream
31	LOC_Os07g20830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12046371	12049805	+	CDS,promoter,downstream
31	LOC_Os06g21780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12584395	12588840	+	CDS
31	LOC_Os06g25180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14731413	14736126	-	CDS,downstream
31	LOC_Os04g17870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9812800	9813330	+	CDS,promoter,downstream
31	LOC_Os02g23827	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13770496	13774936	-	CDS,promoter
31	LOC_Os05g25130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	14504178	14506256	-	CDS
31	LOC_Os05g51890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29712273	29713818	+	CDS,downstream
31	LOC_Os05g41340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24158070	24159283	-	CDS,downstream
31	LOC_Os09g04130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2138633	2145569	+	CDS
31	LOC_Os04g17940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9853098	9858060	-	CDS,promoter,downstream
31	LOC_Os08g22830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13725958	13728005	+	CDS,promoter,downstream
31	LOC_Os04g17150	hypothetical protein	gene	hypothetical protein	chr4	9396145	9396648	+	CDS,promoter,downstream
31	LOC_Os10g16560	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	8182919	8190980	+	CDS,promoter
31	LOC_Os05g22290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12561445	12563139	+	CDS,promoter
31	LOC_Os07g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12503421	12510725	-	CDS
31	LOC_Os08g22320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13450361	13453077	-	CDS,promoter,downstream
31	LOC_Os04g17450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9536030	9538415	+	CDS,promoter,downstream
31	LOC_Os08g22110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13339740	13343402	+	CDS,promoter,downstream
31	LOC_Os08g21080	hypothetical protein	gene	hypothetical protein	chr8	12600148	12600787	+	CDS,promoter,downstream
31	LOC_Os04g16400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8904116	8908906	-	CDS
31	LOC_Os08g22590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13589245	13591351	-	CDS,promoter,downstream
31	LOC_Os07g20710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11970574	11973402	+	CDS,promoter,downstream
31	LOC_Os05g21020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12363435	12368943	-	CDS,promoter,downstream
31	LOC_Os08g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13444083	13448913	+	CDS,promoter,downstream
31	LOC_Os09g36150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	20826782	20828631	+	CDS,promoter
31	LOC_Os05g21000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12356203	12359289	-	CDS,promoter,downstream
31	LOC_Os05g21210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12469654	12471796	-	CDS,promoter,downstream
31	LOC_Os06g29270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16705403	16712256	-	CDS
31	LOC_Os04g04940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2375060	2379760	-	CDS,promoter
31	LOC_Os06g28020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15902547	15904690	+	CDS,promoter,downstream
31	LOC_Os05g22460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12692038	12697016	+	CDS,promoter,downstream
31	LOC_Os09g06160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2889657	2890524	+	CDS,promoter,downstream
31	LOC_Os12g22610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12769165	12776989	+	CDS
31	LOC_Os03g39210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21773841	21777910	-	CDS
31	LOC_Os04g40260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23758997	23762617	+	CDS
31	LOC_Os12g15350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8760825	8766771	+	CDS,promoter
31	LOC_Os04g39730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23489542	23495530	-	CDS,downstream
31	LOC_Os10g20960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10534978	10542608	+	CDS
31	LOC_Os05g20760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12185249	12188439	+	CDS,promoter,downstream
31	LOC_Os03g52100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	29907277	29910356	+	CDS
31	LOC_Os05g20950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12319577	12323015	+	CDS,promoter,downstream
31	LOC_Os05g20550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12060966	12061679	+	CDS,promoter,downstream
31	LOC_Os01g29910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16832266	16842459	+	CDS,promoter,downstream
31	LOC_Os05g15840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8938510	8943003	-	CDS
31	LOC_Os08g22330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13454527	13458516	+	CDS,promoter,downstream
31	LOC_Os08g21124	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12620158	12629677	-	CDS,promoter,downstream
31	LOC_Os10g15180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7979175	7982045	-	CDS,promoter
31	LOC_Os09g01430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	324894	328341	+	CDS,downstream
31	LOC_Os04g13910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7761569	7762436	+	CDS
31	LOC_Os08g22400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13514110	13518399	+	CDS,promoter,downstream
31	LOC_Os07g20730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11990463	11997605	-	CDS,promoter,downstream
31	LOC_Os03g36580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20282910	20285712	-	CDS
31	LOC_Os06g11340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	5964519	5966760	-	CDS,downstream
31	LOC_Os09g05080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2730819	2736327	-	CDS,promoter,downstream
31	LOC_Os07g20630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11921132	11925807	+	CDS,promoter,downstream
31	LOC_Os09g05110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2742554	2743470	-	CDS,promoter,downstream
31	LOC_Os08g22700	hypothetical protein	gene	hypothetical protein	chr8	13650232	13651212	+	CDS,promoter,downstream
31	LOC_Os11g14790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8322032	8323919	+	CDS,promoter
31	LOC_Os12g22190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12494375	12501455	+	CDS
31	LOC_Os03g34140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19444581	19446846	-	CDS,downstream
31	LOC_Os04g29350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17253216	17265177	-	CDS
31	LOC_Os08g22060	hypothetical protein	gene	hypothetical protein	chr8	13174950	13175185	+	CDS,promoter,downstream
31	LOC_Os11g28628	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16082298	16084842	-	CDS,downstream
31	LOC_Os01g33150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18252939	18254514	+	CDS,downstream
31	LOC_Os07g22090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12342660	12346603	+	CDS
31	LOC_Os08g22016	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13239150	13241335	+	CDS,promoter,downstream
31	LOC_Os08g18730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11173779	11184717	+	CDS,promoter
31	LOC_Os03g30030	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	17133040	17134701	-	CDS,downstream
31	LOC_Os01g29900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16760879	16766388	+	CDS,promoter,downstream
31	LOC_Os05g20880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12265247	12266764	-	CDS,promoter,downstream
31	LOC_Os04g27620	expressed protein	gene	expressed protein	chr4	16157624	16160112	-	CDS,promoter
31	LOC_Os04g17410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9516036	9520601	-	CDS,promoter,downstream
31	LOC_Os12g10110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5348232	5349218	-	CDS,promoter,downstream
31	LOC_Os04g17820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9759757	9761175	+	CDS,promoter,downstream
31	LOC_Os12g20260	hypothetical protein	gene	hypothetical protein	chr12	11819142	11820473	-	CDS,promoter
31	LOC_Os07g31040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18379261	18381678	+	CDS,downstream
31	LOC_Os02g11650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5983252	5986466	+	CDS
31	LOC_Os07g28380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16589117	16591818	-	CDS,downstream
31	LOC_Os09g05120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2744901	2749554	+	CDS,promoter,downstream
31	LOC_Os08g22710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13652207	13654112	+	CDS,promoter,downstream
31	LOC_Os01g18650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10500595	10503168	-	CDS
31	LOC_Os06g27880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15797382	15806061	+	CDS
31	LOC_Os05g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6624613	6626681	-	CDS,promoter,downstream
31	LOC_Os03g33319	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19055152	19057576	+	CDS
31	LOC_Os04g16850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9218757	9222938	-	CDS,promoter,downstream
31	LOC_Os09g24400	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	14499315	14502565	+	CDS,promoter
31	LOC_Os01g28550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15982539	15985083	-	CDS,downstream
31	LOC_Os04g17720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9696513	9699213	-	CDS,promoter,downstream
31	LOC_Os02g22720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13533243	13538609	+	CDS
31	LOC_Os06g29280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16713281	16716479	-	CDS
31	LOC_Os09g04660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2480419	2484993	+	CDS
31	LOC_Os10g09280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5032788	5039452	+	CDS,promoter
31	LOC_Os12g25734	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14920973	14924804	-	CDS,downstream
31	LOC_Os01g30940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16883519	16884232	-	CDS,promoter,downstream
31	LOC_Os06g27430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15523449	15523904	-	CDS,downstream
31	LOC_Os02g28500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	16848626	16854965	+	CDS
31	LOC_Os05g22470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12698342	12700777	-	CDS,promoter,downstream
31	LOC_Os05g22630	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	12787240	12789041	+	CDS,downstream
31	LOC_Os08g22028	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13257475	13260666	-	CDS,promoter,downstream
31	LOC_Os09g06210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2902235	2903154	+	CDS,promoter,downstream
31	LOC_Os04g17390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9507177	9509548	-	CDS,promoter,downstream
31	LOC_Os07g21990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12297653	12300107	+	CDS,promoter,downstream
31	LOC_Os11g31860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18256499	18258722	-	CDS,downstream
31	LOC_Os01g29507	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16539152	16544887	+	CDS,downstream
31	LOC_Os06g27990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15881630	15886247	+	CDS
31	LOC_Os08g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13579597	13580766	-	CDS,promoter,downstream
31	LOC_Os04g10590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5738083	5740190	+	CDS,promoter
31	LOC_Os04g48094	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28434486	28448058	-	CDS,downstream
31	LOC_Os08g21900	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	13117201	13118232	-	CDS,promoter,downstream
31	LOC_Os01g32010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17523017	17528889	-	CDS,downstream
31	LOC_Os04g17890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9820943	9828800	+	CDS,promoter,downstream
31	LOC_Os08g21490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12804235	12807451	-	CDS,promoter,downstream
31	LOC_Os04g17240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9441996	9448474	+	CDS,promoter,downstream
31	LOC_Os08g22680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13636873	13640732	+	CDS,promoter,downstream
31	LOC_Os08g21650	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	12893369	12893930	-	CDS,promoter,downstream
31	LOC_Os04g27610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16153774	16157106	-	CDS,downstream
31	LOC_Os05g22360	hypothetical protein	gene	hypothetical protein	chr5	12607088	12607815	-	CDS,promoter,downstream
31	LOC_Os08g21060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12588850	12592251	+	CDS,promoter,downstream
31	LOC_Os05g22340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12583328	12589990	-	CDS,promoter,downstream
31	LOC_Os11g22330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12334994	12338191	+	CDS
31	LOC_Os05g20870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	12256247	12257693	-	CDS,promoter,downstream
31	LOC_Os03g31986	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18290346	18295247	+	CDS
31	LOC_Os08g22004	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13182880	13192790	-	CDS,promoter,downstream
31	LOC_Os01g31030	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16973734	16974446	+	CDS,promoter,downstream
31	LOC_Os02g24000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13906936	13908560	+	CDS,promoter
31	LOC_Os07g26340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	15135712	15137507	+	CDS
31	LOC_Os04g17850	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	9786152	9792626	+	CDS,three_prime_UTR,promoter,downstream
31	LOC_Os09g26640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16161019	16166129	+	CDS,promoter,downstream
31	LOC_Os11g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12324053	12329631	-	CDS,downstream
31	LOC_Os03g61180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34738965	34742113	-	CDS
31	LOC_Os01g31740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17369505	17370217	+	CDS
31	LOC_Os04g18290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10095078	10096880	+	CDS,downstream
31	LOC_Os09g07540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3777505	3782048	-	CDS
31	LOC_Os05g22270	hypothetical protein	gene	hypothetical protein	chr5	12550159	12550631	-	CDS,downstream
31	LOC_Os09g06170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2891827	2893504	-	CDS,promoter,downstream
31	LOC_Os07g15750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9141775	9142773	+	CDS,promoter,downstream
31	LOC_Os11g21790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12035307	12039175	-	CDS
31	LOC_Os11g21960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12133993	12143528	-	CDS
31	LOC_Os05g21110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12411302	12414528	-	CDS,promoter,downstream
31	LOC_Os07g12980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7444044	7449426	-	CDS,promoter
31	LOC_Os02g38700	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr2	23386480	23390994	-	CDS
31	LOC_Os08g21380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12752064	12758023	-	CDS,downstream
31	LOC_Os11g08889	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4705407	4706564	-	CDS
31	LOC_Os04g24370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13963495	13970877	-	CDS,downstream
31	LOC_Os11g22580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12522917	12531017	+	CDS
31	LOC_Os08g39760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25170086	25177797	-	CDS
31	LOC_Os08g21700	DCL, chloroplast precursor, putative, expressed	gene	DCL, chloroplast precursor, putative, expressed	chr8	12998589	13003403	-	three_prime_UTR,promoter
31	LOC_Os08g23654	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14309324	14316929	+	CDS
31	LOC_Os05g20990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12349582	12354414	+	CDS,promoter,downstream
31	LOC_Os10g02860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1148013	1152252	-	CDS
31	LOC_Os12g28159	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	16626013	16629066	+	CDS
31	LOC_Os03g29035	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	16485279	16494546	-	CDS,downstream
31	LOC_Os05g17120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9784594	9797708	+	CDS
31	LOC_Os11g18910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10749099	10750283	-	CDS,downstream
31	LOC_Os09g06880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3296737	3300226	-	CDS
31	LOC_Os09g03100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1474141	1477170	+	CDS,promoter,downstream
31	LOC_Os09g06190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2896735	2897376	-	CDS,promoter,downstream
31	LOC_Os07g20930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12108420	12109070	+	CDS,promoter,downstream
31	LOC_Os07g45700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27281996	27285626	-	CDS,downstream
31	LOC_Os12g24820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14241592	14244778	+	CDS,promoter
31	LOC_Os02g23821	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13727907	13732331	-	CDS,downstream
31	LOC_Os06g29320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16745314	16750068	+	CDS,promoter,downstream
31	LOC_Os08g21500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12810486	12812184	+	CDS,promoter,downstream
31	LOC_Os04g17540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9581395	9583445	-	CDS,promoter,downstream
31	LOC_Os02g23820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13706103	13713388	-	CDS,promoter,downstream
31	LOC_Os08g21240	hypothetical protein	gene	hypothetical protein	chr8	12682542	12683451	-	CDS,promoter,downstream
31	LOC_Os09g06200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2898086	2899577	+	CDS,promoter,downstream
31	LOC_Os05g21050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12383827	12385100	-	CDS,promoter,downstream
31	LOC_Os04g24450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14010257	14015076	+	CDS,promoter,downstream
31	LOC_Os05g22530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12735744	12737768	+	CDS,promoter,downstream
31	LOC_Os01g30956	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	16903759	16909147	+	CDS,three_prime_UTR,promoter,downstream
31	LOC_Os03g33680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19259817	19265696	+	CDS,promoter
31	LOC_Os06g25730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15025319	15032223	+	CDS
31	LOC_Os01g17310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9956020	9957826	-	CDS,downstream
31	LOC_Os06g19140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	10891639	10892351	+	CDS,promoter,downstream
31	LOC_Os01g36750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20410591	20411211	+	CDS,promoter,downstream
31	LOC_Os11g21900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12108629	12110137	+	CDS,promoter
31	LOC_Os04g22790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12893579	12896555	-	CDS
31	LOC_Os04g17740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9710252	9712325	+	CDS,promoter,downstream
31	LOC_Os02g32690	pleiotropic drug resistance protein 15, putative, expressed	gene	pleiotropic drug resistance protein 15, putative, expressed	chr2	19399523	19414925	-	three_prime_UTR,promoter
31	LOC_Os07g17790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10520941	10524554	-	CDS
31	LOC_Os09g05100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2740287	2742055	-	CDS,promoter,downstream
31	LOC_Os04g18310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10099470	10101567	+	CDS,promoter,downstream
31	LOC_Os04g08580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	4660236	4663788	-	CDS,promoter,downstream
31	LOC_Os02g11660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5987067	5993073	-	CDS,promoter
31	LOC_Os07g26200	hypothetical protein	gene	hypothetical protein	chr7	15062333	15063135	-	CDS,promoter,downstream
31	LOC_Os01g21220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11839946	11842208	-	CDS,downstream
31	LOC_Os04g18500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10216802	10221214	+	CDS,promoter,downstream
31	LOC_Os07g20670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11936220	11947843	-	CDS,promoter,downstream
31	LOC_Os07g22070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12334690	12337758	+	CDS
31	LOC_Os11g47438	zinc knuckle family protein	gene	zinc knuckle family protein	chr11	28063229	28068272	-	CDS,promoter
31	LOC_Os05g20900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12272857	12276091	-	CDS,promoter,downstream
31	LOC_Os05g20740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	12171852	12172526	-	CDS,promoter,downstream
31	LOC_Os05g20790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12203222	12203449	-	CDS,promoter,downstream
31	LOC_Os05g36030	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	21272365	21273065	+	CDS,downstream
31	LOC_Os11g12710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7174116	7176945	-	CDS,downstream
31	LOC_Os12g21530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12105021	12105721	+	CDS,promoter,downstream
31	LOC_Os02g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13903955	13906103	-	CDS,downstream
31	LOC_Os04g16260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8825962	8829123	-	CDS,promoter
31	LOC_Os01g02380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	755894	761050	-	CDS,promoter,downstream
31	LOC_Os04g17789	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9740132	9743225	-	CDS,promoter,downstream
31	LOC_Os05g20800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12206933	12209731	+	CDS,promoter,downstream
31	LOC_Os08g22510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13556226	13559004	-	CDS,promoter,downstream
31	LOC_Os08g30010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18430027	18435731	+	CDS,promoter,downstream
31	LOC_Os05g20720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12156032	12159738	-	CDS,downstream
31	LOC_Os05g20820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12218567	12221056	-	CDS,promoter,downstream
31	LOC_Os04g17630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9639255	9641354	+	CDS,promoter,downstream
31	LOC_Os08g22219	unknown	gene	unknown	chr8	13400927	13401676	+	CDS,downstream
31	LOC_Os05g20160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11795643	11801533	+	CDS
31	LOC_Os04g16530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8978507	8984919	-	CDS
31	LOC_Os09g03870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1958631	1979370	+	CDS
31	LOC_Os10g17724	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8886436	8892895	+	CDS
31	LOC_Os08g13170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7824145	7831582	-	CDS
31	LOC_Os12g27096	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15878333	15890592	-	CDS
31	LOC_Os04g17880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9813718	9815688	-	CDS,promoter,downstream
31	LOC_Os08g22630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13610331	13613259	-	CDS,promoter,downstream
31	LOC_Os05g22314	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12568337	12573895	-	CDS,promoter,downstream
31	LOC_Os08g20870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12516475	12519691	+	CDS
31	LOC_Os07g20700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11967889	11968186	-	CDS,promoter,downstream
31	LOC_Os02g29680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17659062	17662119	-	CDS,promoter
31	LOC_Os10g15200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7987229	7987840	-	CDS,promoter,downstream
31	LOC_Os04g13180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7265953	7276625	-	CDS
31	LOC_Os07g22290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12496638	12497968	+	CDS,downstream
31	LOC_Os08g32140	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	19940036	19942143	-	CDS,downstream
31	LOC_Os07g22190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12386350	12388454	+	CDS,promoter,downstream
31	LOC_Os09g29010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17631049	17632587	+	CDS,promoter,downstream
31	LOC_Os08g20220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12128792	12138872	+	CDS,downstream
31	LOC_Os04g18559	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10240333	10241734	-	CDS,promoter,downstream
31	LOC_Os04g16910	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	9242428	9249221	+	CDS,promoter
31	LOC_Os04g18340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10113457	10121199	-	CDS,promoter,downstream
31	LOC_Os07g20780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12018427	12022342	+	CDS,promoter,downstream
31	LOC_Os05g20830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12230548	12234042	+	CDS,promoter,downstream
31	LOC_Os03g35860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19883431	19886023	+	CDS
31	LOC_Os07g20910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12096529	12100749	+	CDS,promoter,downstream
31	LOC_Os08g22100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13337913	13339208	+	CDS,promoter,downstream
31	LOC_Os08g21190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12650619	12652798	-	CDS,promoter,downstream
31	LOC_Os10g08090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4395564	4398142	-	CDS,promoter
31	LOC_Os08g22420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13523797	13528719	-	CDS,promoter,downstream
31	LOC_Os08g18750	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11193834	11196638	+	CDS,promoter
31	LOC_Os01g31300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17120024	17122046	+	CDS,promoter,downstream
31	LOC_Os12g19810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11549274	11556321	-	CDS,downstream
31	LOC_Os08g32150	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr8	19943634	19944797	-	five_prime_UTR,CDS,promoter
31	LOC_Os08g22340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13459856	13465363	+	CDS,promoter,downstream
31	LOC_Os07g21950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12271452	12273856	+	CDS,promoter,downstream
31	LOC_Os08g21800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13045352	13049124	-	CDS,promoter,downstream
31	LOC_Os04g22610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12797940	12801865	+	CDS,downstream
31	LOC_Os09g06130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2861748	2863903	+	CDS,promoter,downstream
31	LOC_Os05g22490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12708761	12719749	-	CDS,promoter,downstream
31	LOC_Os03g38830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21564017	21566228	-	CDS,downstream
31	LOC_Os02g28400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16777308	16787072	-	CDS
31	LOC_Os04g16350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8881136	8884240	-	CDS
31	LOC_Os08g21950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13156260	13157108	+	CDS,promoter,downstream
31	LOC_Os01g30980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16930759	16936372	-	CDS,promoter
31	LOC_Os04g17960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9870739	9872882	+	CDS,promoter,downstream
31	LOC_Os05g31330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18149333	18151183	-	CDS,promoter
31	LOC_Os05g21240	expressed protein	gene	expressed protein	chr5	12532896	12533174	-	CDS,promoter,downstream
31	LOC_Os07g05780	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	2782268	2784508	+	CDS
31	LOC_Os02g22660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13498911	13499570	+	CDS
31	LOC_Os08g22180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13375895	13382289	+	CDS,promoter,downstream
31	LOC_Os08g07610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	4269219	4273984	+	CDS
31	LOC_Os04g17200	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr4	9423473	9424091	-	CDS,promoter,downstream
31	LOC_Os04g17160	hypothetical protein	gene	hypothetical protein	chr4	9407503	9411294	+	CDS,promoter,downstream
31	LOC_Os08g22032	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	13262451	13263882	+	CDS,promoter,downstream
31	LOC_Os10g05380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2648860	2653402	-	CDS,promoter,downstream
31	LOC_Os04g13960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7792580	7798654	+	CDS
31	LOC_Os05g22480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12705730	12708009	-	CDS,promoter,downstream
31	LOC_Os04g17710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9695366	9695875	+	CDS,promoter,downstream
31	LOC_Os09g07310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3612475	3613459	+	CDS,promoter
31	LOC_Os07g22120	hypothetical protein	gene	hypothetical protein	chr7	12362375	12363992	+	CDS,promoter,downstream
31	LOC_Os05g20960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12331952	12333255	+	CDS,promoter,downstream
31	LOC_Os09g02990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1400324	1405827	-	CDS
31	LOC_Os02g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13068447	13075373	-	CDS,downstream
31	LOC_Os06g15310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8682143	8689046	-	CDS,promoter
31	LOC_Os05g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14314075	14317720	-	CDS
31	LOC_Os06g26310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15398161	15398649	+	CDS,promoter,downstream
31	LOC_Os08g21790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13041650	13044523	+	CDS,promoter,downstream
31	LOC_Os04g17360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9499087	9500161	-	CDS,promoter,downstream
31	LOC_Os01g29560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16564507	16570394	-	CDS
31	LOC_Os07g20740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12003199	12004448	-	CDS,promoter,downstream
31	LOC_Os05g22410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12656827	12660809	+	CDS,promoter,downstream
31	LOC_Os02g25480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	14869579	14873608	+	CDS
31	LOC_Os08g22130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13346121	13348626	-	CDS,promoter,downstream
31	LOC_Os06g25930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15176968	15179111	+	CDS,promoter
31	LOC_Os02g07520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3888538	3895439	-	CDS,promoter
31	LOC_Os08g22380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13492239	13496636	+	CDS,promoter,downstream
31	LOC_Os05g08660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4740294	4743212	-	CDS,promoter
31	LOC_Os02g04820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2222760	2224908	-	CDS,downstream
31	LOC_Os04g18360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10122976	10128463	-	CDS,promoter,downstream
31	LOC_Os04g24390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13974907	13977607	+	CDS,promoter
31	LOC_Os08g22760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13677333	13684482	-	CDS,promoter,downstream
31	LOC_Os07g22250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12463487	12464143	+	CDS,promoter,downstream
31	LOC_Os08g02790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1171742	1175400	-	CDS,downstream
31	LOC_Os05g21230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12522517	12524911	-	CDS,promoter,downstream
31	LOC_Os05g21040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12373435	12380106	-	CDS,promoter,downstream
31	LOC_Os06g27480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15555366	15562338	+	CDS,promoter
31	LOC_Os01g61100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35361388	35367769	+	CDS
31	LOC_Os01g33220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18289288	18294797	+	CDS,promoter,downstream
31	LOC_Os04g16600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9020489	9029767	+	CDS,promoter
31	LOC_Os12g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13629073	13636238	+	CDS
31	LOC_Os04g17574	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9594871	9598357	+	CDS,promoter,downstream
31	LOC_Os03g49240	hypothetical protein	gene	hypothetical protein	chr3	28036584	28037876	-	CDS,downstream
31	LOC_Os07g18690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11040808	11046808	-	CDS
31	LOC_Os07g26780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15465152	15472780	-	CDS
31	LOC_Os01g31200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17058238	17061003	-	CDS
31	LOC_Os05g15030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8517081	8522188	+	CDS
31	LOC_Os02g24230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14036866	14041277	-	CDS,promoter
31	LOC_Os11g47432	zinc knuckle family protein	gene	zinc knuckle family protein	chr11	28019046	28023549	-	CDS
31	LOC_Os01g31020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16960244	16972708	+	CDS,promoter,downstream
31	LOC_Os08g22014	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13228767	13230829	+	CDS,promoter,downstream
31	LOC_Os05g20980	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	gene	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	chr5	12343115	12344600	+	CDS,promoter,downstream
31	LOC_Os08g22018	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13243008	13243834	+	CDS,promoter,downstream
31	LOC_Os08g21140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12634346	12636698	-	CDS,promoter,downstream
31	LOC_Os12g25040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14363510	14371840	-	CDS
31	LOC_Os05g20400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11965773	11971934	-	CDS
31	LOC_Os06g07720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3735816	3741496	-	CDS,downstream
31	LOC_Os04g18580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10250808	10257214	-	CDS,promoter,downstream
31	LOC_Os10g17590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8811552	8813252	-	CDS,promoter
31	LOC_Os12g25050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14376517	14381704	-	CDS
31	LOC_Os04g16890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9235523	9236908	+	CDS,promoter,downstream
31	LOC_Os08g21410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12765581	12768678	+	CDS,promoter,downstream
31	LOC_Os12g25830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14976024	14983193	-	CDS
31	LOC_Os08g22740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13663019	13666700	+	CDS,promoter,downstream
31	LOC_Os01g30950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16886515	16888661	+	CDS,promoter
31	LOC_Os05g27170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	15749683	15753549	+	CDS
31	LOC_Os09g17030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10435661	10441366	-	CDS,promoter,downstream
31	LOC_Os08g21474	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12796837	12799277	+	CDS,promoter,downstream
31	LOC_Os07g22100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12350385	12351586	+	CDS,promoter,downstream
31	LOC_Os03g35330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19567287	19568957	-	CDS,downstream
31	LOC_Os06g30160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	17409062	17409777	-	CDS,downstream
31	LOC_Os03g39400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	21891898	21898982	-	CDS
31	LOC_Os08g20982	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12560086	12560653	-	CDS,downstream
31	LOC_Os04g17340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9492007	9495341	+	CDS,promoter,downstream
31	LOC_Os10g11100	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	6154595	6159688	-	five_prime_UTR,downstream
31	LOC_Os05g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12755567	12758256	+	CDS,promoter
31	LOC_Os10g16410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8107365	8109797	+	CDS,promoter,downstream
31	LOC_Os03g39284	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21819168	21829965	-	CDS
31	LOC_Os11g37880	stripe rust resistance protein Yr10, putative, expressed	gene	stripe rust resistance protein Yr10, putative, expressed	chr11	21985507	21992437	+	CDS,three_prime_UTR
31	LOC_Os11g24990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13764773	13771911	+	CDS
31	LOC_Os05g20770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12193460	12199488	+	CDS,promoter,downstream
31	LOC_Os01g35720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19776800	19785043	-	CDS
31	LOC_Os04g18230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10069759	10070472	-	CDS
31	LOC_Os04g17260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9454001	9460159	+	CDS,promoter
31	LOC_Os08g22080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13329181	13333927	-	CDS,promoter,downstream
31	LOC_Os05g14510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8205104	8212394	+	CDS
31	LOC_Os10g05370	hypothetical protein	gene	hypothetical protein	chr10	2646469	2647722	-	CDS,downstream
31	LOC_Os12g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11798389	11805464	-	CDS
31	LOC_Os02g52970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	32399665	32404759	+	CDS,downstream
31	LOC_Os08g22260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13414808	13417483	+	CDS,promoter,downstream
31	LOC_Os04g20640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11542254	11548743	-	CDS
31	LOC_Os08g22020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13292761	13297024	-	CDS,promoter,downstream
31	LOC_Os04g18900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10497763	10501542	+	promoter,downstream
31	LOC_Os05g12430	hypothetical protein	gene	hypothetical protein	chr5	7145489	7146569	+	promoter
31	LOC_Os12g22990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12993594	13000268	-	promoter,downstream
31	LOC_Os03g60060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34153164	34154919	+	promoter
31	LOC_Os11g22740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12615720	12618143	-	promoter
31	LOC_Os03g35360	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	19611440	19611919	+	promoter
31	LOC_Os12g23130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13078495	13082675	-	promoter
31	LOC_Os08g35300	expressed protein	gene	expressed protein	chr8	22272815	22273516	+	promoter
31	LOC_Os12g22620	endonuclease/Exonuclease/phosphatase family protein, expressed	gene	endonuclease/Exonuclease/phosphatase family protein, expressed	chr12	12777781	12781676	+	promoter
31	LOC_Os06g34420	DEAD/DEAH box helicase domain protein, putative	gene	DEAD/DEAH box helicase domain protein, putative	chr6	20024975	20030158	+	promoter
31	LOC_Os03g33328	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19058481	19064222	+	promoter
31	LOC_Os08g33450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20864085	20869558	-	promoter
31	LOC_Os04g17490	hypothetical protein	gene	hypothetical protein	chr4	9558645	9559146	-	promoter,downstream
31	LOC_Os12g30860	unknown	gene	unknown	chr12	18511855	18512230	+	promoter
31	LOC_Os08g21260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12693152	12693556	+	promoter,downstream
31	LOC_Os01g56420	ctr copper transporter family protein, putative, expressed	gene	ctr copper transporter family protein, putative, expressed	chr1	32522284	32523139	+	promoter
31	LOC_Os03g57820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	32937211	32940305	+	promoter
31	LOC_Os10g23870	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12168279	12170237	-	promoter
31	LOC_Os07g05800	glutathione S-transferase, N-terminal domain containing protein, expressed	gene	glutathione S-transferase, N-terminal domain containing protein, expressed	chr7	2790451	2791558	+	promoter
31	LOC_Os08g22990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13820670	13826694	-	promoter
31	LOC_Os02g23860	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13809053	13810425	-	promoter
31	LOC_Os11g12730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7179207	7184737	-	promoter
31	LOC_Os04g18590	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	10258630	10259073	+	promoter,downstream
31	LOC_Os12g10130	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5356646	5358682	-	promoter
31	LOC_Os05g16270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9206912	9212652	-	promoter
31	LOC_Os04g24290	wall-associated receptor kinase 3 precursor, putative	gene	wall-associated receptor kinase 3 precursor, putative	chr4	13903675	13905779	+	promoter
31	LOC_Os12g19820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11557663	11558313	-	promoter
31	LOC_Os01g29880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16738035	16739888	-	promoter
31	LOC_Os01g41310	OsFBX18 - F-box domain containing protein, expressed	gene	OsFBX18 - F-box domain containing protein, expressed	chr1	23375554	23377550	+	promoter
31	LOC_Os05g24290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13992874	13998450	+	promoter
31	LOC_Os03g32820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18777798	18778721	+	promoter
31	LOC_Os04g21070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11834704	11835547	-	promoter
31	LOC_Os02g24010	hypothetical protein	gene	hypothetical protein	chr2	13909993	13910738	+	promoter
31	LOC_Os11g18590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10485913	10486575	-	promoter
31	LOC_Os06g11350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	5968231	5969041	-	promoter
31	LOC_Os06g26300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15396703	15397092	+	promoter,downstream
31	LOC_Os08g20922	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12530378	12534427	-	promoter
31	LOC_Os05g11690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	6628058	6634022	+	promoter
31	LOC_Os11g46180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27498154	27498519	-	promoter
31	LOC_Os02g49000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29958098	29966763	+	promoter
31	LOC_Os01g37780	hypothetical protein	gene	hypothetical protein	chr1	21133872	21135371	-	promoter
31	LOC_Os03g23140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13374633	13376884	-	promoter
31	LOC_Os03g33620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19217164	19218821	-	promoter
31	LOC_Os08g24530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14810918	14814664	-	promoter
31	LOC_Os08g29250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17929283	17935949	-	promoter
31	LOC_Os07g28320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16533962	16534360	+	promoter
31	LOC_Os07g22300	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	12500533	12500979	-	promoter
31	LOC_Os11g22590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12531632	12533442	-	promoter
31	LOC_Os10g16510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8160958	8161640	-	promoter
31	LOC_Os08g23670	hypothetical protein	gene	hypothetical protein	chr8	14316985	14317787	-	promoter
31	LOC_Os09g06320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2964732	2967345	+	promoter
31	LOC_Os03g29950	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	gene	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	chr3	17066602	17071063	+	promoter
31	LOC_Os04g18640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10293388	10298226	-	promoter,downstream
31	LOC_Os06g30179	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr6	17410748	17427550	+	promoter
31	LOC_Os04g18780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10432556	10435503	+	promoter
31	LOC_Os07g25640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14697865	14701061	-	promoter
31	LOC_Os10g02850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1144356	1147392	+	promoter
31	LOC_Os08g22450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13539290	13539817	-	promoter,downstream
31	LOC_Os04g18430	hypothetical protein	gene	hypothetical protein	chr4	10170267	10170563	-	promoter,downstream
31	LOC_Os04g27096	hypothetical protein	gene	hypothetical protein	chr4	15872671	15874053	-	promoter
31	LOC_Os08g21180	maSp2a, putative	gene	maSp2a, putative	chr8	12647749	12648561	-	promoter,downstream
31	LOC_Os08g02770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1163979	1166123	+	promoter
31	LOC_Os02g37470	tetratricopeptide repeat containing protein, putative, expressed	gene	tetratricopeptide repeat containing protein, putative, expressed	chr2	22611634	22614236	+	promoter
31	LOC_Os12g14020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7963028	7963801	-	promoter
31	LOC_Os04g05730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2926084	2930167	-	promoter
31	LOC_Os01g35460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19622382	19622944	+	promoter
31	LOC_Os10g11810	dehydrogenase, putative, expressed	gene	dehydrogenase, putative, expressed	chr10	6556409	6559864	+	promoter
31	LOC_Os07g15730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9136643	9137002	-	promoter
31	LOC_Os05g18190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10452091	10452516	+	promoter
31	LOC_Os05g20530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	12053703	12056786	-	promoter
31	LOC_Os04g12880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7112280	7115591	-	promoter
31	LOC_Os10g20970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10543481	10548279	+	promoter
31	LOC_Os06g16220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9233087	9236324	+	promoter
31	LOC_Os02g16290	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr2	9268756	9272208	+	promoter
31	LOC_Os02g25670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15015299	15018415	-	promoter
31	LOC_Os04g18510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10221917	10222318	-	promoter,downstream
31	LOC_Os04g24460	phytase, putative	gene	phytase, putative	chr4	14018701	14019902	+	promoter
31	LOC_Os04g20120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11199406	11203745	-	promoter
31	LOC_Os06g24450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14325222	14327797	+	promoter
31	LOC_Os08g22604	hypothetical protein	gene	hypothetical protein	chr8	13600453	13601554	-	promoter,downstream
31	LOC_Os04g16370	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	8891195	8897290	+	promoter
31	LOC_Os09g06150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2877900	2884422	-	promoter,downstream
31	LOC_Os08g21450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	12783386	12783685	+	promoter,downstream
31	LOC_Os10g16620	hypothetical protein	gene	hypothetical protein	chr10	8215794	8216330	+	promoter
31	LOC_Os08g26620	hypothetical protein	gene	hypothetical protein	chr8	16187970	16190847	-	promoter
31	LOC_Os05g19860	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11571198	11572762	+	promoter
31	LOC_Os04g19980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11126776	11127790	-	promoter
31	LOC_Os11g47455	hypothetical protein	gene	hypothetical protein	chr11	28060236	28060601	+	promoter,downstream
31	LOC_Os07g16810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9861680	9874929	+	promoter
31	LOC_Os12g24830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14245156	14248476	-	promoter
31	LOC_Os01g51840	IQ calmodulin-binding motif family protein, putative, expressed	gene	IQ calmodulin-binding motif family protein, putative, expressed	chr1	29800036	29805925	-	promoter
31	LOC_Os03g30040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	17136621	17137452	-	promoter
31	LOC_Os10g05390	hypothetical protein	gene	hypothetical protein	chr10	2656324	2657384	+	promoter
31	LOC_Os12g28650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16931486	16932643	+	promoter
31	LOC_Os04g48640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28796685	28803330	-	promoter
31	LOC_Os04g18380	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr4	10135284	10141350	+	promoter
31	LOC_Os07g18380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10889204	10890666	+	promoter
31	LOC_Os05g26170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15167394	15175519	-	promoter
31	LOC_Os05g22300	transferase family protein, putative	gene	transferase family protein, putative	chr5	12564386	12565886	+	promoter,downstream
31	LOC_Os12g37830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	23198240	23205547	+	promoter
31	LOC_Os10g11110	expressed protein	gene	expressed protein	chr10	6161131	6167051	+	promoter
31	LOC_Os04g17310	hypothetical protein	gene	hypothetical protein	chr4	9476909	9477118	-	promoter,downstream
31	LOC_Os12g22070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12416092	12416837	+	promoter
31	LOC_Os11g22150	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	12240214	12243096	-	promoter
31	LOC_Os02g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13539575	13540274	-	promoter
31	LOC_Os10g16630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8220162	8220779	+	promoter
31	LOC_Os08g22149	CBS domain containing membrane protein, putative, expressed	gene	CBS domain containing membrane protein, putative, expressed	chr8	13356498	13365130	+	promoter
31	LOC_Os08g09150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5303876	5307017	+	promoter
31	LOC_Os06g28930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16495105	16497938	-	promoter
31	LOC_Os12g23000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13002588	13005284	+	promoter
31	LOC_Os07g15720	hypothetical protein	gene	hypothetical protein	chr7	9135936	9136355	+	promoter
31	LOC_Os09g19630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11729926	11732076	-	promoter
31	LOC_Os03g33740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19286239	19289119	+	promoter
31	LOC_Os08g16280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9935375	9939805	-	promoter
31	LOC_Os02g39689	unknown	gene	unknown	chr2	23967783	23968090	-	promoter
31	LOC_Os05g20860	hypothetical protein	gene	hypothetical protein	chr5	12253346	12254442	+	promoter,downstream
31	LOC_Os04g19740	transketolase, chloroplast precursor, putative, expressed	gene	transketolase, chloroplast precursor, putative, expressed	chr4	11017354	11023384	+	promoter
31	LOC_Os01g40780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23034821	23036186	+	promoter,downstream
31	LOC_Os07g22210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12396366	12396857	-	promoter,downstream
31	LOC_Os10g14070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7671086	7672588	+	promoter
31	LOC_Os06g27490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15562657	15565853	-	promoter
31	LOC_Os04g15910	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr4	8628442	8631841	-	promoter
31	LOC_Os04g16900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9239757	9240011	+	promoter,downstream
31	LOC_Os09g06350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2982082	2987613	-	promoter,downstream
31	LOC_Os04g22630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12809178	12813110	+	promoter
31	LOC_Os10g21450	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	10912084	10913650	-	promoter
31	LOC_Os04g07330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3893944	3899970	+	promoter
31	LOC_Os07g18330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10858013	10859005	+	promoter
31	LOC_Os11g31870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18260621	18261829	+	promoter
31	LOC_Os12g20200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11777867	11779406	+	promoter
31	LOC_Os01g66780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	38776998	38778022	+	promoter
31	LOC_Os05g07380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3936012	3941719	+	promoter
31	LOC_Os01g32020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17530731	17533091	+	promoter
31	LOC_Os07g22970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12952979	12957432	+	promoter,downstream
31	LOC_Os01g28280	hypothetical protein	gene	hypothetical protein	chr1	15841936	15842753	-	promoter
31	LOC_Os02g20670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12178361	12179089	-	promoter
31	LOC_Os02g04830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	2226405	2227106	-	promoter
31	LOC_Os07g29550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17347785	17352545	+	promoter
31	LOC_Os05g52019	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29808008	29808994	+	promoter
31	LOC_Os11g08900	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4707510	4708568	+	promoter
31	LOC_Os04g16630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9036924	9043944	-	promoter
31	LOC_Os12g18050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10374877	10377671	-	promoter
31	LOC_Os04g24400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13978245	13978754	-	promoter
31	LOC_Os05g20910	hypothetical protein	gene	hypothetical protein	chr5	12279340	12279633	-	promoter,downstream
31	LOC_Os10g05849	unknown	gene	unknown	chr10	2955808	2956009	-	promoter
31	LOC_Os06g35610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20775767	20776162	+	promoter
31	LOC_Os01g31080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16988339	16990956	+	promoter
31	LOC_Os05g13390	expressed protein	gene	expressed protein	chr5	7432266	7438245	+	promoter
31	LOC_Os08g21890	hypothetical protein	gene	hypothetical protein	chr8	13108348	13111040	-	promoter,downstream
31	LOC_Os04g13350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7413732	7418741	-	promoter
31	LOC_Os08g33950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21253641	21259615	-	promoter
31	LOC_Os07g24080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	13650064	13650707	-	promoter
31	LOC_Os05g20430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11982928	11990774	-	promoter
31	LOC_Os05g20680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12124154	12127659	-	promoter,downstream
31	LOC_Os01g31990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17516516	17516767	+	promoter
31	LOC_Os07g31050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18382663	18386055	+	promoter
31	LOC_Os03g23120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13367839	13369558	+	promoter
31	LOC_Os09g04960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2662446	2668408	+	promoter
31	LOC_Os05g52037	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29816565	29817551	+	promoter
31	LOC_Os05g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12791065	12791793	+	promoter
31	LOC_Os06g31340	hypothetical protein	gene	hypothetical protein	chr6	18237097	18237378	-	promoter
31	LOC_Os08g21220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12664745	12670900	+	promoter
31	LOC_Os10g01860	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	559322	560577	-	promoter
31	LOC_Os04g19590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10896100	10906611	+	promoter
31	LOC_Os02g18240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10586839	10589951	-	promoter
31	LOC_Os03g43169	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24082127	24082629	+	promoter
31	LOC_Os10g18640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9380054	9381014	-	promoter
31	LOC_Os08g21050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12583229	12585428	+	promoter
31	LOC_Os12g15140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8630338	8638009	-	promoter
31	LOC_Os10g24340	hypothetical protein	gene	hypothetical protein	chr10	12402571	12403686	+	promoter
31	LOC_Os04g17120	formin-like protein 20, putative	gene	formin-like protein 20, putative	chr4	9367818	9370901	-	promoter
31	LOC_Os07g20200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11656379	11659679	+	promoter
31	LOC_Os01g37390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20875232	20876443	-	promoter
31	LOC_Os03g32000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18300946	18303998	-	promoter
31	LOC_Os04g26790	eukaryotic aspartyl protease domain containing protein, expressed	gene	eukaryotic aspartyl protease domain containing protein, expressed	chr4	15622825	15644552	-	promoter
31	LOC_Os04g18910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10504479	10507693	+	promoter
31	LOC_Os04g22620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12803255	12806439	-	promoter,downstream
31	LOC_Os08g21530	hypothetical protein	gene	hypothetical protein	chr8	12827450	12827881	-	promoter
31	LOC_Os04g16360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8889645	8890813	+	promoter
31	LOC_Os10g19990	hypothetical protein	gene	hypothetical protein	chr10	9957319	9958547	-	promoter
31	LOC_Os08g22980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13819036	13820009	-	promoter
31	LOC_Os02g24060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13933244	13934839	-	promoter
31	LOC_Os05g15820	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	8934796	8937656	-	promoter,downstream
31	LOC_Os02g21990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13076893	13077966	-	promoter
31	LOC_Os06g25190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14737326	14738270	-	promoter
31	LOC_Os06g39160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23249555	23252138	+	promoter
31	LOC_Os02g16020	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	9097488	9098827	-	promoter
31	LOC_Os04g05180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2577886	2581474	-	promoter
31	LOC_Os06g27460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15545140	15549775	+	promoter
31	LOC_Os06g25160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14719492	14720624	-	promoter
31	LOC_Os02g40480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	24539576	24542719	-	promoter
31	LOC_Os03g33960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19375338	19376033	+	promoter
31	LOC_Os06g26330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15412135	15412773	+	promoter
31	LOC_Os08g22610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13603883	13604686	+	promoter
31	LOC_Os06g22590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13135918	13139116	-	promoter
31	LOC_Os01g47820	S-locus-like receptor protein kinase, putative, expressed	gene	S-locus-like receptor protein kinase, putative, expressed	chr1	27374261	27376685	-	promoter
31	LOC_Os08g18720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11172408	11173637	+	promoter
31	LOC_Os10g19090	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9652707	9653063	-	promoter
31	LOC_Os02g52980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	32405671	32408867	-	promoter,downstream
31	LOC_Os12g29120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17228841	17232035	-	promoter
31	LOC_Os01g31230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17076960	17080573	-	promoter,downstream
31	LOC_Os02g47730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29168472	29176129	-	promoter
31	LOC_Os03g47574	hypothetical protein	gene	hypothetical protein	chr3	26896576	26896887	-	promoter
31	LOC_Os08g22170	hypothetical protein	gene	hypothetical protein	chr8	13369573	13369800	+	promoter,downstream
31	LOC_Os10g11560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6412968	6413569	-	promoter
31	LOC_Os06g35460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20660170	20664084	-	promoter
31	LOC_Os04g19250	hypothetical protein	gene	hypothetical protein	chr4	10679928	10680431	+	promoter
31	LOC_Os06g25800	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	15069034	15073246	-	promoter
31	LOC_Os05g22570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12758995	12759369	+	promoter
31	LOC_Os04g17090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9356827	9357195	-	promoter
31	LOC_Os04g02220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	760841	763140	-	promoter
31	LOC_Os07g18350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10870995	10873924	-	promoter
31	LOC_Os01g36760	hypothetical protein	gene	hypothetical protein	chr1	20413271	20415217	-	promoter
31	LOC_Os02g31010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18514373	18518146	-	promoter
31	LOC_Os02g48900	aspartic proteinase nepenthesin-1 precursor, putative, expressed	gene	aspartic proteinase nepenthesin-1 precursor, putative, expressed	chr2	29905441	29910448	+	promoter
31	LOC_Os10g06220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3191174	3192815	+	promoter
31	LOC_Os06g23730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	13864855	13868093	-	promoter
31	LOC_Os04g16240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8814148	8816043	+	promoter,downstream
31	LOC_Os04g38150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22519466	22520815	-	promoter
31	LOC_Os01g31290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17115022	17115555	+	promoter
31	LOC_Os10g09270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5026935	5030356	-	promoter,downstream
31	LOC_Os08g29700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18236993	18239138	-	promoter
31	LOC_Os11g37890	NAD dependent epimerase/dehydratase family protein, putative, expressed	gene	NAD dependent epimerase/dehydratase family protein, putative, expressed	chr11	21993671	21998552	-	promoter
31	LOC_Os08g11900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6973989	6975441	-	promoter
31	LOC_Os03g52470	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr3	30102948	30107881	+	promoter
31	LOC_Os08g32800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20327341	20332823	+	promoter
31	LOC_Os05g22280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12555531	12555938	+	promoter,downstream
31	LOC_Os09g02810	CCAAT/enhancer-binding protein, putative, expressed	gene	CCAAT/enhancer-binding protein, putative, expressed	chr9	1297966	1311563	+	promoter
31	LOC_Os08g30060	proton pump interactor, putative, expressed	gene	proton pump interactor, putative, expressed	chr8	18471454	18478139	+	promoter
31	LOC_Os08g14744	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8867622	8872223	-	promoter
31	LOC_Os02g17800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10294469	10296923	-	promoter
31	LOC_Os04g32440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19276709	19279619	-	promoter
31	LOC_Os07g16310	hypothetical protein	gene	hypothetical protein	chr7	9519136	9520138	+	promoter
31	LOC_Os08g26400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	16081591	16083888	-	promoter
31	LOC_Os10g18730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9448481	9449614	+	promoter
31	LOC_Os10g17210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8576232	8578159	+	promoter
31	LOC_Os09g11490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6409064	6412354	+	promoter
31	LOC_Os04g39740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23497661	23502987	-	promoter
31	LOC_Os04g20110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	11198611	11198853	-	promoter
31	LOC_Os04g18350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10121826	10122359	+	promoter,downstream
31	LOC_Os11g20730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11996566	11997051	-	promoter
31	LOC_Os07g30450	hypothetical protein	gene	hypothetical protein	chr7	18022618	18023221	-	promoter
31	LOC_Os02g21370	hypothetical protein	gene	hypothetical protein	chr2	12685120	12685344	-	promoter
31	LOC_Os05g28240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16480235	16481521	-	promoter,downstream
31	LOC_Os07g17440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	10292463	10296161	+	promoter
31	LOC_Os02g22760	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	13547151	13552610	-	promoter
31	LOC_Os03g26750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15258466	15265029	+	promoter
31	LOC_Os07g18290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10836675	10838455	+	promoter
31	LOC_Os04g18010	cleavage and polyadenylation specificity factor subunit 1, putative, expressed	gene	cleavage and polyadenylation specificity factor subunit 1, putative, expressed	chr4	9879475	9906954	-	promoter
31	LOC_Os12g18440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10662049	10662468	+	promoter
31	LOC_Os03g38840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21567914	21568736	-	promoter
31	LOC_Os04g13874	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7735924	7737546	-	promoter
31	LOC_Os10g15160	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	7964595	7964903	+	promoter,downstream
31	LOC_Os10g14950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7848975	7851472	+	promoter
31	LOC_Os02g23823	helix-loop-helix DNA-binding domain containing protein, expressed	gene	helix-loop-helix DNA-binding domain containing protein, expressed	chr2	13753341	13761401	+	promoter
31	LOC_Os02g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11916547	11917740	+	promoter
31	LOC_Os08g21030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12576512	12577777	-	promoter,downstream
31	LOC_Os06g25350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14849246	14852102	-	promoter
31	LOC_Os05g41360	expressed protein	gene	expressed protein	chr5	24164626	24166145	-	promoter
31	LOC_Os03g24110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13683496	13690446	+	promoter
31	LOC_Os04g44380	hypothetical protein	gene	hypothetical protein	chr4	26091919	26093051	-	promoter
31	LOC_Os01g30990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16937443	16938750	-	promoter,downstream
31	LOC_Os04g16430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8925635	8932305	-	promoter,downstream
31	LOC_Os02g25400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14801180	14803305	-	promoter
31	LOC_Os07g22140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12371474	12372678	-	promoter,downstream
31	LOC_Os10g19100	hypothetical protein	gene	hypothetical protein	chr10	9653240	9655680	-	promoter
31	LOC_Os01g60410	ubiquitin-conjugating enzyme, putative, expressed	gene	ubiquitin-conjugating enzyme, putative, expressed	chr1	34936677	34940953	+	promoter
31	LOC_Os10g21784	hypothetical protein	gene	hypothetical protein	chr10	11105402	11109842	+	promoter
31	LOC_Os08g19089	unknown	gene	unknown	chr8	11390436	11390737	+	promoter
31	LOC_Os08g02800	ribosome, putative	gene	ribosome, putative	chr8	1178322	1178687	+	promoter
31	LOC_Os09g04950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2655057	2659221	-	promoter
31	LOC_Os07g29510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	17323339	17324164	+	promoter
31	LOC_Os10g20450	MATE efflux family protein, putative, expressed	gene	MATE efflux family protein, putative, expressed	chr10	10222031	10224734	+	promoter
31	LOC_Os05g22770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12857186	12862015	-	promoter
31	LOC_Os09g12830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7373109	7376673	+	promoter
31	LOC_Os09g06250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2936672	2938345	+	promoter
31	LOC_Os03g01020	pectinesterase inhibitor domain containing protein, putative, expressed	gene	pectinesterase inhibitor domain containing protein, putative, expressed	chr3	25526	27075	+	promoter
31	LOC_Os08g21740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13020504	13022170	+	promoter
31	LOC_Os02g23830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13787317	13787798	+	promoter
31	LOC_Os05g22580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12759705	12760821	-	promoter
31	LOC_Os01g33470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18430915	18432410	+	promoter
31	LOC_Os06g28030	hypothetical protein	gene	hypothetical protein	chr6	15905024	15906173	-	promoter
31	LOC_Os07g11090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6127268	6128587	+	promoter
31	LOC_Os04g40270	hypothetical protein	gene	hypothetical protein	chr4	23763991	23764266	-	promoter
31	LOC_Os08g08180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4656307	4659018	+	promoter
31	LOC_Os06g34410	hypothetical protein	gene	hypothetical protein	chr6	20024004	20024330	-	promoter
31	LOC_Os05g27260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15792308	15794109	-	promoter
31	LOC_Os08g20967	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12549298	12557867	-	promoter
31	LOC_Os09g29020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17632816	17633758	-	promoter
31	LOC_Os04g10500	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	5701467	5702836	-	promoter
31	LOC_Os11g18919	hypothetical protein	gene	hypothetical protein	chr11	10752694	10753783	+	promoter
31	LOC_Os05g15650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8852409	8853515	-	promoter
31	LOC_Os02g23829	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	13782297	13782713	-	promoter
31	LOC_Os05g20690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12131608	12132825	-	promoter
31	LOC_Os06g28144	expressed protein	gene	expressed protein	chr6	15982101	15984318	-	promoter
31	LOC_Os04g22600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12786249	12792991	+	promoter
31	LOC_Os05g27180	ligA, putative	gene	ligA, putative	chr5	15754185	15754685	-	promoter
31	LOC_Os02g20080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11824825	11827638	-	promoter
31	LOC_Os09g40014	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22958069	22961703	+	promoter
31	LOC_Os07g20260	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	11677730	11679089	-	promoter
31	LOC_Os06g27390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15509210	15509959	+	promoter,downstream
31	LOC_Os05g23600	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed	gene	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed	chr5	13472086	13476878	+	promoter
31	LOC_Os09g14820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8823402	8825932	-	promoter
31	LOC_Os12g36130	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	22116085	22117073	+	promoter
31	LOC_Os05g20914	expressed protein	gene	expressed protein	chr5	12293850	12298462	+	promoter
31	LOC_Os04g17270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9460789	9464025	-	promoter,downstream
31	LOC_Os05g18140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10426601	10427898	+	promoter
31	LOC_Os12g21600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12135688	12142697	+	promoter
31	LOC_Os04g17479	expressed protein	gene	expressed protein	chr4	9553142	9555409	-	promoter,downstream
31	LOC_Os08g22840	hypothetical protein	gene	hypothetical protein	chr8	13732712	13735745	+	promoter
31	LOC_Os08g22550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13577173	13578600	-	promoter,downstream
31	LOC_Os04g16110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8740936	8743874	+	promoter
31	LOC_Os05g16960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9667127	9674844	-	promoter
31	LOC_Os07g12970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7440511	7443710	+	promoter,downstream
31	LOC_Os04g27630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16160430	16166417	+	promoter
31	LOC_Os08g11870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6960243	6961523	-	promoter
31	LOC_Os03g49250	OsFBO16 - F-box and other domain containing protein, expressed	gene	OsFBO16 - F-box and other domain containing protein, expressed	chr3	28039046	28041195	+	promoter
31	LOC_Os04g16420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8919461	8922581	+	promoter,downstream
31	LOC_Os09g03110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1477822	1488054	-	promoter
31	LOC_Os03g60050	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	34144243	34150911	+	promoter,downstream
31	LOC_Os05g28250	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	16482222	16485251	-	promoter
31	LOC_Os03g17720	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	9859386	9859808	+	promoter
31	LOC_Os09g01440	hypothetical protein	gene	hypothetical protein	chr9	330845	331108	+	promoter
31	LOC_Os10g25530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13128671	13135329	+	promoter
31	LOC_Os01g26190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14840129	14843240	-	promoter
31	LOC_Os08g21020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12570447	12571574	+	promoter
31	LOC_Os09g40022	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22971743	22975376	+	promoter
31	LOC_Os08g21370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12746961	12749435	-	promoter
31	LOC_Os06g26150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15295175	15301561	-	promoter
31	LOC_Os12g37480	invertase/pectin methylesterase inhibitor family protein, putative, expressed	gene	invertase/pectin methylesterase inhibitor family protein, putative, expressed	chr12	22966327	22967418	-	promoter
31	LOC_Os10g15040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7891764	7895577	-	promoter
31	LOC_Os08g20230	hypothetical protein	gene	hypothetical protein	chr8	12139956	12142492	-	promoter
31	LOC_Os08g26450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16111363	16116336	+	promoter
31	LOC_Os05g16170	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9140719	9143414	+	promoter
31	LOC_Os04g17220	hypothetical protein	gene	hypothetical protein	chr4	9430197	9430457	+	promoter,downstream
31	LOC_Os03g43180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	24083152	24083475	-	promoter
31	LOC_Os11g22140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12238789	12239794	-	promoter
31	LOC_Os02g56660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34727274	34730692	-	promoter
31	LOC_Os05g21250	hypothetical protein	gene	hypothetical protein	chr5	12538673	12539783	+	promoter
31	LOC_Os01g29130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16311757	16312402	-	promoter
31	LOC_Os09g40000	AGAP005770-PA, putative, expressed	gene	AGAP005770-PA, putative, expressed	chr9	22933500	22938707	+	promoter
31	LOC_Os10g27260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14304819	14320802	-	promoter
31	LOC_Os05g22680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12821108	12821955	-	promoter
31	LOC_Os07g22160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12377064	12377585	+	promoter
31	LOC_Os04g10490	hypothetical protein	gene	hypothetical protein	chr4	5700326	5700598	+	promoter
31	LOC_Os12g28168	hypothetical protein	gene	hypothetical protein	chr12	16629660	16630037	-	promoter
31	LOC_Os08g14260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8550501	8551058	+	promoter
31	LOC_Os03g39900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22177762	22182539	+	promoter
31	LOC_Os02g14420	hypothetical protein	gene	hypothetical protein	chr2	7922249	7922954	+	promoter
31	LOC_Os04g17230	hypothetical protein	gene	hypothetical protein	chr4	9434708	9435085	+	promoter,downstream
31	LOC_Os08g27860	EARLY flowering protein, putative, expressed	gene	EARLY flowering protein, putative, expressed	chr8	16985760	16988653	+	promoter
31	LOC_Os08g22354	polyadenylate-binding protein, putative, expressed	gene	polyadenylate-binding protein, putative, expressed	chr8	13469297	13476757	+	promoter
31	LOC_Os08g22190	hypothetical protein	gene	hypothetical protein	chr8	13386572	13387388	+	promoter
31	LOC_Os12g25750	hypothetical protein	gene	hypothetical protein	chr12	14926760	14927694	+	promoter
31	LOC_Os11g23980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	13127961	13129385	+	promoter
31	LOC_Os08g17020	hypothetical protein	gene	hypothetical protein	chr8	10424437	10427001	-	promoter
31	LOC_Os01g31280	hypothetical protein	gene	hypothetical protein	chr1	17111654	17112213	-	downstream
31	LOC_Os03g32970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18848759	18851447	+	downstream
31	LOC_Os04g17700	kinesin heavy chain isolog, putative, expressed	gene	kinesin heavy chain isolog, putative, expressed	chr4	9685798	9694263	+	downstream
31	LOC_Os04g16390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8902001	8903635	+	downstream
31	LOC_Os10g15170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7974529	7977928	+	downstream
31	LOC_Os04g21060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11830231	11832873	-	downstream
31	LOC_Os03g01016	expressed protein	gene	expressed protein	chr3	18876	22618	-	downstream
31	LOC_Os01g40810	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	23055143	23061294	-	downstream
31	LOC_Os08g16950	hypothetical protein	gene	hypothetical protein	chr8	10379107	10379741	-	downstream
31	LOC_Os10g29900	hypothetical protein	gene	hypothetical protein	chr10	15460437	15460847	-	downstream
31	LOC_Os07g22270	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr7	12481299	12485845	-	downstream
31	LOC_Os07g19200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11366728	11374083	+	downstream
31	LOC_Os01g31190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17053469	17057332	-	downstream
31	LOC_Os10g24910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12750539	12755280	+	downstream
31	LOC_Os02g27370	hypothetical protein	gene	hypothetical protein	chr2	16129148	16129498	+	downstream
31	LOC_Os05g52010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29804138	29805001	-	downstream
31	LOC_Os12g22980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12987275	12990034	+	downstream
31	LOC_Os05g24270	PPR repeat domain containing protein, putative	gene	PPR repeat domain containing protein, putative	chr5	13975294	13975668	+	downstream
31	LOC_Os06g23720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13862323	13864047	-	downstream
31	LOC_Os02g07510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3886548	3888154	+	downstream
31	LOC_Os04g10569	glutamyl-tRNA amidotransferase, putative	gene	glutamyl-tRNA amidotransferase, putative	chr4	5734879	5736532	+	downstream
31	LOC_Os03g57808	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	32932529	32934307	+	downstream
31	LOC_Os03g35480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19668318	19670613	+	downstream
31	LOC_Os08g35280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	22265784	22266140	-	downstream
31	LOC_Os12g18430	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	10658207	10659919	+	downstream
31	LOC_Os06g27450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15543094	15544654	-	downstream
31	LOC_Os06g17629	hypothetical protein	gene	hypothetical protein	chr6	10238733	10239221	-	downstream
31	LOC_Os01g17300	expressed protein	gene	expressed protein	chr1	9953130	9954672	+	downstream
31	LOC_Os04g19730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11012149	11015431	-	downstream
31	LOC_Os05g51770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29640975	29645538	-	downstream
31	LOC_Os02g23950	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr2	13870417	13871329	-	downstream
31	LOC_Os08g07560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4247197	4251998	-	downstream
31	LOC_Os05g32520	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	18938958	18941660	-	downstream
31	LOC_Os05g27440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	15892946	15893239	-	downstream
31	LOC_Os05g40920	expressed protein	gene	expressed protein	chr5	23937687	23940027	-	downstream
31	LOC_Os05g19440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11295349	11297682	-	downstream
31	LOC_Os04g13340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7411070	7412140	-	downstream
31	LOC_Os05g35300	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	20898760	20900725	-	downstream
31	LOC_Os01g40770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23032004	23034034	+	downstream
31	LOC_Os07g06020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2909859	2916608	-	downstream
31	LOC_Os09g05060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	2718889	2722767	-	downstream
31	LOC_Os11g47436	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28051752	28054269	+	downstream
31	LOC_Os04g24414	expressed protein	gene	expressed protein	chr4	13990787	13996987	-	downstream
31	LOC_Os06g16210	expressed protein	gene	expressed protein	chr6	9228869	9230629	-	downstream
31	LOC_Os05g12420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7138648	7142283	+	downstream
31	LOC_Os05g27250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15789487	15790409	+	downstream
31	LOC_Os02g14340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7869071	7871088	-	downstream
31	LOC_Os01g39180	DUF260 domain containing protein, putative	gene	DUF260 domain containing protein, putative	chr1	22041885	22044269	+	downstream
31	LOC_Os06g28920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16490519	16493785	+	downstream
31	LOC_Os08g23710	ribosomal protein L7Ae, putative, expressed	gene	ribosomal protein L7Ae, putative, expressed	chr8	14337745	14340226	-	downstream
31	LOC_Os07g16800	OsFBX233 - F-box domain containing protein	gene	OsFBX233 - F-box domain containing protein	chr7	9857218	9859580	+	downstream
31	LOC_Os08g21230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12671516	12674821	-	downstream
31	LOC_Os03g36570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20272859	20282626	+	downstream
31	LOC_Os07g18320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10852414	10855845	+	downstream
31	LOC_Os07g30050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17722616	17725673	+	downstream
31	LOC_Os10g24260	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	12362634	12363302	+	downstream
31	LOC_Os08g39570	Leucine Rich Repeat family protein, expressed	gene	Leucine Rich Repeat family protein, expressed	chr8	25029126	25036724	+	downstream
31	LOC_Os10g20950	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	10533300	10533608	+	downstream
31	LOC_Os08g11860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6956037	6956798	-	downstream
31	LOC_Os06g17540	hypothetical protein	gene	hypothetical protein	chr6	10171850	10172653	+	downstream
31	LOC_Os01g60400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34932859	34933568	+	downstream
31	LOC_Os04g19300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10727194	10730831	-	downstream
31	LOC_Os10g16550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8176507	8181568	+	downstream
31	LOC_Os09g39980	ubiquitin family protein, putative, expressed	gene	ubiquitin family protein, putative, expressed	chr9	22924984	22928257	-	downstream
31	LOC_Os09g06290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2946031	2947470	+	downstream
31	LOC_Os06g35450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20654817	20657113	+	downstream
31	LOC_Os08g18790	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11211082	11212629	+	downstream
31	LOC_Os02g16270	xa1, putative, expressed	gene	xa1, putative, expressed	chr2	9257996	9262612	+	downstream
31	LOC_Os04g34870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21004116	21004825	+	downstream
31	LOC_Os03g23110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13359730	13365739	-	downstream
31	LOC_Os01g32600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17873210	17876291	-	downstream
31	LOC_Os05g46860	FHA domain containing protein, putative	gene	FHA domain containing protein, putative	chr5	27063036	27064617	+	downstream
31	LOC_Os10g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11413935	11419904	-	downstream
31	LOC_Os09g06120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2859564	2860276	+	downstream
31	LOC_Os07g18370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10883532	10886713	-	downstream
31	LOC_Os10g14889	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7805617	7808241	-	downstream
31	LOC_Os01g32044	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17538774	17541231	+	downstream
31	LOC_Os10g14930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7843687	7845821	+	downstream
31	LOC_Os03g23130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13372799	13373491	-	downstream
31	LOC_Os05g08640	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr5	4735027	4737026	-	downstream
31	LOC_Os01g36740	expressed protein	gene	expressed protein	chr1	20406593	20408624	-	downstream
31	LOC_Os03g32830	hypothetical protein	gene	hypothetical protein	chr3	18782394	18783040	-	downstream
31	LOC_Os10g15190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7982932	7983958	+	downstream
31	LOC_Os09g22550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	13602143	13602367	+	downstream
31	LOC_Os01g28270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15836390	15838895	-	downstream
31	LOC_Os12g09530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5002516	5005930	-	downstream
31	LOC_Os12g29090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17219469	17220807	+	downstream
31	LOC_Os07g12959	unknown	gene	unknown	chr7	7436850	7438342	-	downstream
31	LOC_Os04g16924	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9251095	9254354	+	downstream
31	LOC_Os08g22200	expressed protein	gene	expressed protein	chr8	13390181	13396125	-	downstream
31	LOC_Os05g48430	hypothetical protein	gene	hypothetical protein	chr5	27709630	27709845	-	downstream
31	LOC_Os02g38690	protein phosphatase 2C containing protein	gene	protein phosphatase 2C containing protein	chr2	23379495	23385971	+	downstream
31	LOC_Os05g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12747904	12749772	-	downstream
31	LOC_Os04g13870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7730615	7733431	+	downstream
31	LOC_Os09g04940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2651140	2654280	+	downstream
31	LOC_Os05g16950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9661179	9664989	-	downstream
31	LOC_Os03g35390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19619776	19625688	-	downstream
31	LOC_Os10g11550	hypothetical protein	gene	hypothetical protein	chr10	6409931	6410404	+	downstream
31	LOC_Os11g46170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27492600	27494166	-	downstream
31	LOC_Os03g39870	expressed protein	gene	expressed protein	chr3	22170233	22172554	-	downstream
31	LOC_Os12g20270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11825746	11832383	+	downstream
31	LOC_Os08g32790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	20319108	20324299	-	downstream
31	LOC_Os07g15740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9137274	9141492	+	downstream
31	LOC_Os09g08010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4124391	4126330	-	downstream
31	LOC_Os02g22820	expressed protein	gene	expressed protein	chr2	13606025	13607504	-	downstream
31	LOC_Os03g53930	expressed protein	gene	expressed protein	chr3	30913572	30914793	+	downstream
31	LOC_Os02g23828	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13776695	13779410	+	downstream
31	LOC_Os11g14320	hypothetical protein	gene	hypothetical protein	chr11	8030996	8032972	-	downstream
31	LOC_Os02g23826	expressed protein	gene	expressed protein	chr2	13766169	13767536	-	downstream
31	LOC_Os12g28150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16616434	16620306	+	downstream
31	LOC_Os06g26130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15288366	15291158	+	downstream
31	LOC_Os12g14010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7959511	7960810	+	downstream
31	LOC_Os04g19970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11123464	11124269	-	downstream
31	LOC_Os05g22850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12911044	12912177	+	downstream
31	LOC_Os11g22130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12234955	12237143	-	downstream
31	LOC_Os07g17930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10606984	10607550	+	downstream
31	LOC_Os11g22720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12608623	12611424	-	downstream
31	LOC_Os04g22780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	12892618	12892911	+	downstream
31	LOC_Os06g26320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15408152	15409670	-	downstream
31	LOC_Os08g26610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16182297	16184135	-	downstream
31	LOC_Os09g24390	zinc knuckle family protein	gene	zinc knuckle family protein	chr9	14494773	14499151	+	downstream
31	LOC_Os10g15030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7887876	7888517	+	downstream
31	LOC_Os10g03170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1337816	1340262	+	downstream
31	LOC_Os10g16610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8213046	8214042	-	downstream
31	LOC_Os01g02370	receptor-like kinase ARK1AS, putative, expressed	gene	receptor-like kinase ARK1AS, putative, expressed	chr1	751080	753992	-	downstream
31	LOC_Os08g16400	hypothetical protein	gene	hypothetical protein	chr8	10025245	10025661	-	downstream
31	LOC_Os03g34120	hypothetical protein	gene	hypothetical protein	chr3	19438976	19439604	+	downstream
31	LOC_Os03g39880	expressed protein	gene	expressed protein	chr3	22171620	22173456	+	downstream
31	LOC_Os09g25300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	15143153	15146964	-	downstream
31	LOC_Os06g22710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	13205699	13211427	+	downstream
31	LOC_Os01g68990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	40076945	40081367	-	downstream
31	LOC_Os08g21760	Rer1 protein, putative, expressed	gene	Rer1 protein, putative, expressed	chr8	13025880	13032040	-	downstream
31	LOC_Os10g21780	hypothetical protein	gene	hypothetical protein	chr10	11101969	11102307	+	downstream
31	LOC_Os12g28640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16925317	16928602	-	downstream
31	LOC_Os04g16898	unknown	gene	unknown	chr4	9205254	9205454	+	downstream
31	LOC_Os03g33670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19256531	19258352	+	downstream
31	LOC_Os08g19080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11386396	11388696	+	downstream
31	LOC_Os07g11990	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	6646242	6647633	-	downstream
31	LOC_Os04g27600	hypothetical protein	gene	hypothetical protein	chr4	16150948	16152140	+	downstream
31	LOC_Os02g22650	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr2	13495407	13498719	+	downstream
31	LOC_Os07g20950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12116784	12117539	+	downstream
31	LOC_Os11g20179	expressed protein	gene	expressed protein	chr11	11660638	11663035	+	downstream
31	LOC_Os10g08080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4390646	4393860	+	downstream
31	LOC_Os08g29999	unknown	gene	unknown	chr8	18426012	18427334	-	downstream
31	LOC_Os07g25220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14417467	14418263	+	downstream
31	LOC_Os10g27250	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	14298642	14303249	-	downstream
31	LOC_Os12g20250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11806973	11810659	+	downstream
31	LOC_Os07g38190	hypothetical protein	gene	hypothetical protein	chr7	22908663	22909403	+	downstream
31	LOC_Os06g09770	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	4973619	4976602	+	downstream
31	LOC_Os09g17170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10536403	10537957	+	downstream
31	LOC_Os04g39720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23485568	23488683	+	downstream
31	LOC_Os12g36120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22110194	22113212	+	downstream
31	LOC_Os08g26730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16257793	16258554	-	downstream
31	LOC_Os01g62140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	35971819	35972616	-	downstream
31	LOC_Os04g50168	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29745910	29747581	+	downstream
31	LOC_Os07g18340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10865447	10868900	-	downstream
31	LOC_Os05g24790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	14310906	14312989	+	downstream
31	LOC_Os05g52028	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	29810061	29810633	-	downstream
31	LOC_Os02g22810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13591783	13593150	+	downstream
31	LOC_Os08g21660	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr8	12904545	12911486	-	downstream
31	LOC_Os04g16480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	8953704	8954102	-	downstream
31	LOC_Os01g31340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17141457	17143810	-	downstream
31	LOC_Os04g10480	hypothetical protein	gene	hypothetical protein	chr4	5695556	5696224	+	downstream
31	LOC_Os01g35450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19615028	19619886	+	downstream
31	LOC_Os01g18020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10079785	10081250	-	downstream
31	LOC_Os02g30974	expressed protein	gene	expressed protein	chr2	18495334	18503763	-	downstream
31	LOC_Os12g29110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17226479	17227105	-	downstream
31	LOC_Os02g48890	hypothetical protein	gene	hypothetical protein	chr2	29902617	29903090	-	downstream
31	LOC_Os12g15120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8623547	8627229	-	downstream
31	LOC_Os11g01350	ligA, putative	gene	ligA, putative	chr11	204308	204751	-	downstream
31	LOC_Os01g32460	expressed protein	gene	expressed protein	chr1	17797215	17797986	+	downstream
31	LOC_Os04g13790	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7687833	7689766	+	downstream
31	LOC_Os04g19090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10583663	10589828	-	downstream
31	LOC_Os06g35600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	20771755	20774043	+	downstream
31	LOC_Os06g17070	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	9891374	9894169	-	downstream
31	LOC_Os08g02780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1166750	1170041	-	downstream
31	LOC_Os04g14160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7911342	7912958	+	downstream
31	LOC_Os05g11670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	6620859	6622768	+	downstream
31	LOC_Os12g21970	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr12	12361949	12362766	+	downstream
31	LOC_Os02g39670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	23960206	23962653	+	downstream
31	LOC_Os03g35720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19782410	19785170	-	downstream
31	LOC_Os08g22920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13776922	13778388	+	downstream
31	LOC_Os01g31170	hypothetical protein	gene	hypothetical protein	chr1	17042821	17043270	+	downstream
31	LOC_Os07g18280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10833850	10835263	-	downstream
31	LOC_Os05g20390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11961908	11965143	+	downstream
31	LOC_Os12g20210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11780181	11785834	-	downstream
31	LOC_Os03g31540	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	17966111	17967312	-	downstream
31	LOC_Os09g04450	hypothetical protein	gene	hypothetical protein	chr9	2362830	2368344	+	downstream
31	LOC_Os09g06260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2938928	2940727	-	downstream
31	LOC_Os11g11840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6567675	6569314	+	downstream
31	LOC_Os10g16490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8154509	8155984	-	downstream
31	LOC_Os10g21440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10909212	10909859	+	downstream
31	LOC_Os06g30040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17298425	17303590	+	downstream
31	LOC_Os01g29030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16252847	16253281	-	downstream
31	LOC_Os08g14300	hypothetical protein	gene	hypothetical protein	chr8	8564032	8564349	-	downstream
31	LOC_Os02g20230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11912779	11913372	-	downstream
31	LOC_Os10g15220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7996691	7998469	+	downstream
31	LOC_Os05g16160	malonyl-CoA isoflavone 7-O-glucoside-6-O-malonyltransferase, putative	gene	malonyl-CoA isoflavone 7-O-glucoside-6-O-malonyltransferase, putative	chr5	9137845	9138393	+	downstream
31	LOC_Os10g15150	hypothetical protein	gene	hypothetical protein	chr10	7959376	7960176	+	downstream
31	LOC_Os07g30440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18015326	18016318	-	downstream
31	LOC_Os02g29650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17645833	17646303	+	downstream
31	LOC_Os09g06420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3021967	3023367	+	downstream
31	LOC_Os02g18220	hypothetical protein	gene	hypothetical protein	chr2	10579620	10579871	+	downstream
31	LOC_Os11g20790	adenylate kinase, putative, expressed	gene	adenylate kinase, putative, expressed	chr11	12028946	12033855	+	downstream
31	LOC_Os10g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12417305	12420005	+	downstream
31	LOC_Os03g14230	hypothetical protein	gene	hypothetical protein	chr3	7719568	7720656	-	downstream
31	LOC_Os10g15230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8002081	8003618	+	downstream
31	LOC_Os04g02210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	757906	758685	-	downstream
31	LOC_Os06g27620	hypothetical protein	gene	hypothetical protein	chr6	15626840	15627547	-	downstream
31	LOC_Os07g18680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11037008	11039390	-	downstream
31	LOC_Os05g22260	crooked neck, putative, expressed	gene	crooked neck, putative, expressed	chr5	12544047	12549054	-	downstream
31	LOC_Os04g17040	hypothetical protein	gene	hypothetical protein	chr4	9327359	9327927	-	downstream
31	LOC_Os08g20885	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12524586	12525390	+	downstream
31	LOC_Os03g61170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34736495	34738210	-	downstream
31	LOC_Os12g24810	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	14239428	14239862	+	downstream
31	LOC_Os09g06340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2975750	2976142	+	downstream
31	LOC_Os07g22024	zinc finger family protein, putative, expressed	gene	zinc finger family protein, putative, expressed	chr7	12312500	12324686	-	downstream
31	LOC_Os11g26259	unknown	gene	unknown	chr11	14567289	14567836	-	downstream
31	LOC_Os07g17430	hypothetical protein	gene	hypothetical protein	chr7	10289274	10290156	+	downstream
31	LOC_Os03g32810	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	18774418	18774906	+	downstream
31	LOC_Os12g10100	ligA, putative	gene	ligA, putative	chr12	5346839	5347288	+	downstream
31	LOC_Os03g49230	acetyltransferase, GNAT family, putative, expressed	gene	acetyltransferase, GNAT family, putative, expressed	chr3	28032400	28035432	-	downstream
31	LOC_Os06g27340	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15454249	15454962	+	downstream
31	LOC_Os04g16902	unknown	gene	unknown	chr4	9205451	9205522	+	downstream
31	LOC_Os11g23190	hypothetical protein	gene	hypothetical protein	chr11	12886713	12889184	+	downstream
31	LOC_Os12g29440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	17483182	17484777	-	downstream
31	LOC_Os02g25660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15006738	15009845	+	downstream
31	LOC_Os01g56400	ABC transporter, ATP-binding protein, putative, expressed	gene	ABC transporter, ATP-binding protein, putative, expressed	chr1	32512649	32515984	-	downstream
31	LOC_Os12g21520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12102048	12103437	+	downstream
31	LOC_Os04g18884	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10491714	10495351	-	downstream
31	LOC_Os02g39764	expressed protein	gene	expressed protein	chr2	24019287	24026406	-	downstream
31	LOC_Os02g22750	hypothetical protein	gene	hypothetical protein	chr2	13544713	13545168	+	downstream
31	LOC_Os08g16270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9931262	9934594	-	downstream
31	LOC_Os04g19240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10673791	10677104	+	downstream
31	LOC_Os06g26340	CGMC_MAPKCMGC_2.10 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	gene	CGMC_MAPKCMGC_2.10 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	chr6	15413830	15422650	-	downstream
31	LOC_Os02g19860	pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed	gene	pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed	chr2	11668274	11673601	+	downstream
31	LOC_Os07g30700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18167275	18174097	+	downstream
31	LOC_Os07g24060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13642583	13645121	+	downstream
31	LOC_Os06g29310	ulp1 protease family protein, putative, expressed	gene	ulp1 protease family protein, putative, expressed	chr6	16731926	16744664	-	downstream
31	LOC_Os02g12189	unknown	gene	unknown	chr2	6336412	6336837	-	downstream
31	LOC_Os01g31730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17362397	17368001	-	downstream
31	LOC_Os03g33690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19266929	19270547	+	downstream
31	LOC_Os07g17910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10593382	10599109	-	downstream
31	LOC_Os07g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11673337	11674881	-	downstream
31	LOC_Os04g16640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9047225	9048181	-	downstream
31	LOC_Os04g27094	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15866995	15868880	-	downstream
31	LOC_Os02g25390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14797384	14800070	+	downstream
31	LOC_Os04g16620	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9034347	9035060	-	downstream
31	LOC_Os05g20540	hypothetical protein	gene	hypothetical protein	chr5	12059733	12060069	-	downstream
31	LOC_Os02g24670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14302634	14308271	+	downstream
31	LOC_Os08g25120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15247195	15250431	-	downstream
31	LOC_Os08g21720	rhamnogalacturonate lyase, putative	gene	rhamnogalacturonate lyase, putative	chr8	13015067	13015485	-	downstream
31	LOC_Os08g26440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16108280	16108606	-	downstream
31	LOC_Os09g04830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2571804	2575935	-	downstream
31	LOC_Os04g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12763731	12764507	+	downstream
31	LOC_Os06g27370	expressed protein	gene	expressed protein	chr6	15497179	15499987	-	downstream
31	LOC_Os02g22780	T-complex protein, putative, expressed	gene	T-complex protein, putative, expressed	chr2	13560749	13565938	-	downstream
31	LOC_Os09g32740	ubiquitin carboxyl-terminal hydrolase family protein, expressed	gene	ubiquitin carboxyl-terminal hydrolase family protein, expressed	chr9	19521702	19527377	-	downstream
31	LOC_Os09g19620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11726504	11728083	+	downstream
31	LOC_Os09g06140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2875363	2876549	+	downstream
31	LOC_Os12g22180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12492216	12493454	-	downstream
31	LOC_Os11g22440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12422782	12425358	+	downstream
31	LOC_Os07g28300	leucine rich repeat protein, putative	gene	leucine rich repeat protein, putative	chr7	16527713	16530653	-	downstream
31	LOC_Os09g14930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8941334	8945761	-	downstream
31	LOC_Os09g40075	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22999910	23003544	-	downstream
31	LOC_Os11g04610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1959939	1960652	+	downstream
31	LOC_Os04g18990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10545904	10547395	+	downstream
31	LOC_Os08g17030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10427752	10431132	-	downstream
31	LOC_Os12g19440	hypothetical protein	gene	hypothetical protein	chr12	11293171	11293621	-	downstream
31	LOC_Os02g22490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13423733	13424905	+	downstream
31	LOC_Os03g13670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7391948	7395924	-	downstream
31	LOC_Os08g21670	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	12912054	12913110	+	downstream
31	LOC_Os10g04210	hypothetical protein	gene	hypothetical protein	chr10	1960747	1962867	+	downstream
31	LOC_Os08g29240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17923189	17927317	+	downstream
31	LOC_Os07g28210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16472862	16477435	-	downstream
31	LOC_Os02g56650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34724875	34726653	+	downstream
31	LOC_Os04g16450	aquaporin protein, putative, expressed	gene	aquaporin protein, putative, expressed	chr4	8943483	8945304	-	downstream
31	LOC_Os09g14800	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	8811485	8817640	+	downstream
31	LOC_Os07g13690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7854036	7856960	-	downstream
31	LOC_Os01g29890	hypothetical protein	gene	hypothetical protein	chr1	16742155	16742427	-	downstream
31	LOC_Os09g12820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7369444	7370941	+	downstream
31	LOC_Os11g18900	expressed protein	gene	expressed protein	chr11	10746049	10748577	+	downstream
31	LOC_Os02g24530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14208514	14209581	-	downstream