Mouse ENCODE datasets at UCSC are listed in the Experiment Submissions spreadsheet below. Terms appearing in the spreadsheet are described in the Registered Variables page. Use these terms in the UCSC track search tool (Advanced tab) to select data for viewing in the browser. Files can be downloaded from the ENCODE Downloads page or via the Downloads link on the selected track description pages.
All ENCODE data here are freely available for download and analysis. Data listed as "released" have undergone quality review and have been released to the UCSC public site. Datasets that have been updated with newer versions may have been revoked. If so, they will no longer be accessible from the ENCODE and UCSC search and menu interfaces nor at GEO. The data may be present on the downloads site, but will be marked 'replaced' or 'revoked' in the metadata file, 'files.txt' present in each downloads directory.